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Jump to:     Books     Book chapters     Journal articles     Master's theses     Ph.D. dissertations     Reports    

Books       back to the top
Busch, D.E., J.C. Trexler (eds.) 2003. Monitoring Ecosystems: Interdisciplinary Approaches for Evaluating Ecoregional Initiatives. Island Press, Washington, D.C.. 447 pp.

Hollander, G. 2008. Raising Cane in the Glades: The Global Sugar Trade and the Transformation of Florida. The University of Chicago Press, Chicago.

Ogden, L. (In Press). The Bill Ashley Jungles: Landscape Ethnography and the Politics of Nature in the Florida Everglades. University of Minnesota, Minneapolis, MN.

Book chapters       back to the top
Cooper, S., E.E. Gaiser, A. Wachnicka. (In Press). Estuarine paleoecological reconstructions using diatoms . In Smol, J.P., E.F. Stoermer (eds.) The Diatoms: Applications in Environmental and Earth Sciences. Cambridge University Press, New York.

Davis, S.E., D. Lirman, J. Wozniak. (In Press). Nitrogen and phosphorus exchange between tropical coastal ecosystems . In Nagelkerken, Ivan (ed.) Ecological Connectivity Among Tropical Coastal Ecosystems. Springer, .

DeAngelis, D.L., J.C. Trexler, D.D. Donalson. (In Press). Competition dynamics in a seasonally varying wetland: importance of temporal variability and spatial heterogeneity . In Cantrell, S., C. Cosner, S. Ruan (eds.) Spatial Ecology. Chapman Hall/CRC Press, .

Dittmar, T., B. Koch, R. Jaffe. 2009. Tools for studying biogeochemical connectivity among tropical coastal ecosystems . Pages 425-455 In Nagelkerken, Ivan (ed.) Ecological Connectivity among Tropical Coastal Ecosystems. Springer, .

Gaiser, E.E., K. Ruhland. (In Press). Diatoms as Indicators of Environmental Change in Wetlands and Peatlands . In Smol, J.P., E.F. Stoermer (eds.) The Diatoms: Applications in Environmental and Earth Sciences. Cambridge University Press, New York.

Hall, R.O., S.E. Thomas, E.E. Gaiser. 2007. Measuring primary production in freshwater ecosystems . Pages 175-203 In Fahey, T.J., A.K. Knapp (eds.) Principles and Standards for Measuring Net Primary Production in Long-Term Ecological Studies. Oxford University Press, .

Knapp, A.K., J.M. Briggs, D.L. Childers. 2007. Estimating aboveground net primary production in grassland and herbaceous dominated systems . Pages 27- 48 In Fahey, T.J., A.K. Knapp (eds.) Principles and Standards for Measuring Net Primary Production in Long-term Ecological Studies. Oxford University Press, .

Trexler, J.C., D.E. Busch. 2003. Monitoring, assessment, and ecoregional initiatives: a synthesis . Pages 405-424 In Busch, D.E., J.C. Trexler (eds.) Monitoring Ecosystems: Interdisciplinary Approaches for Evaluating Ecoregional Initiatives. Island Press, Washington, D.C..

Trexler, J.C., D.L. DeAngelis. (In Press). Modeling the evolution of complex reproductive adaptations in poeciliid fishes: Matrotrophy and superfetation . In Uribe, M.C., H.J. Greer (eds.) Viviparous Fishes II. New Life Publications, Homestead, FL.

Trexler, J.C., D.L. DeAngelis, J. Jiang. (In Press). Community assembly and mode of reproduction: predicting the distribution of livebearing fishes . In Evans, J., A. Pilastro, I. Schlupp (eds.) Ecology and Evolution of Poeciliid Fishes. University of Chicago Press, Chicago, IL.

Trexler, J.C., W.F. Loftus, J. Chick. 2003. Setting and monitoring restoration goals in the absence of historical data: The case of fishes in the Florida Everglades . Pages 351-376 In Busch, D.E., J.C. Trexler (eds.) Monitoring Ecosystems: Interdisciplinary Approaches for Evaluating Ecoregional Initiatives. Island Press, Washington, D.C..

Twilley, R.R., V.H. Rivera-Monroy. 2009. Ecogeomorphic Models of Nutrient Biogeochemistry for Mangrove Wetlands . Pages 641-675 In Perillo, G.M.E., E. Wolanski, D.R. Cahoon, M.M. Brinson (eds.) Coastal Wetlands: An Integrated Ecosystem Approach. Elsevier, .

Journal articles       back to the top
Anderson, W.T., J.W. Fourqurean. 2003. Intra- and interannual variability in seagrass carbon and nitrogen stable isotopes from south Florida, a preliminary study. Organic Geochemistry , 34(2): 185-194.
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Anderson, W.T., L.S.L. Sternberg, M.C. Pinzon, T. Troxler-Gann, D.L. Childers, M. Duever. 2005. Carbon isotopic composition of cypress trees from South Florida and changing hydrologic condition. Dendrochronologia , 23(1): 1-10.
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Armentano, T.V., J.P. Sah, M.S. Ross, D.T. Jones, H.C. Cooley, C.S. Smith. 2006. Rapid responses of vegetation to hydrological changes in Taylor Slough, Everglades National Park, Florida, USA. Hydrobiologia , 569(1): 293-309.
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Armitage, A.R., J.W. Fourqurean. 2009. Stable isotopes reveal complex changes in trophic relationships following nutrient addition in a coastal marine ecosystem. Estuaries and Coasts , 32: 1152-1164.
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Armitage, A.R., T.A. Frankovich, J.W. Fourqurean. 2006. Variable responses within epiphytic and benthic microalgal communities to nutrient enrichment. Hydrobiologia , 569(1): 423-435.
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Armitage, A.R., T.A. Frankovich, K.L. HeckJr., J.W. Fourqurean. 2005. Experimental nutrient enrichment causes complex changes in seagrass, microalgae, and macroalgae community structure in Florida Bay. Estuaries , 28(3): 422-434.
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Baber, M.J., D.L. Childers, K.J. Babbitt, D.H. Anderson. 2002. Controls on fish distribution and abundance in temporary wetlands. Canadian Journal of Fisheries and Aquatic Sciences , 59(9): 1441-1450.
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Balcarczyk, K.L., J.B. Jones Jr., R. Jaffe, N. Maie. 2009. Stream dissolved organic matter bioavailability and composition in watersheds underlain with discontinuous permafrost. Biogeochemistry , 94: 255-270.
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Barr, J.G., J.D. Fuentes, N. Wang, Y. Edmonds, J.C. Zieman, B.P. Hayden, D.L. Childers. 2003. Red mangroves emit hydrocarbons. Southeastern Naturalist , 2(4): 499-510.
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Barr, J.G., J.D. Fuentes, T.L. O'Halloran, D. Barr, J.C. Zieman. 2006. Carbon assimilation by mangrove forests in the Florida Everglades. Amalgam , 1: 27-37.
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Barr, J.G., J.D. Fuentes, V. Engel, J.C. Zieman. 2009. Physiological responses of red mangroves to the climate in the Florida Everglades. Journal of Geophysical Research , 114: G02008.
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Barr, J.G., T.L. O'Halloran, J.D. Fuentes, T.A. Frankovich, J.C. Zieman, D.L. Childers. (In Review). Investigating mangrove forest-atmosphere interactions. Frontiers in Ecology

Bazante, J., G. Jacobi, H. Solo-Gabriele, D.R. Reed, S. Mitchell-Bruker, D.L. Childers, L. Leonard, M.S. Ross. 2006. Hydrologic measurements and implications for tree island formation within Everglades National Park. Journal of Hydrology , 329(3-4): 606-619.
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Beck, M.W., K.L. HeckJr., K.W. Able, D.L. Childers, D.B. Eggleston, B.M. Gillanders, B.S. Halpern, C.G. Hays, K. Hoshino, T.J. Minello, R.J. Orth, P.F. Sheridan, M.P. Weinstein. 2003. The role of nearshore ecosystems as fish and shellfish nurseries. Issues in Ecology , 11: 1-12.

Blum, M.J., J.S. McLachlan, C.J. Saunders, R. Hamilton, J.D. Herrick. (In Review). Genetic variation within Schoenoplectus americanus (Cyperaceae) across multiple spatial scales. Molecular Ecology

Borum, J., O. Pedersen, T. Greve, T.A. Frankovich, J.C. Zieman, J.W. Fourqurean, C.J. Madden. 2005. The potential role of plant oxygen and sulphide dynamics in die-off events of the tropical seagrass, Thalassia testudinum. Journal of Ecology , 93(1): 148-158.
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Bouillon, S., A.V. Borges, E. Castaneda, K. Diele, T. Dittmar, N.C. Duke, E. Kristensen, S.Y. Lee, C. Marchand, J.J. Middelburg, V.H. Rivera-Monroy, R.R. Twilley, T.J. Smith. 2008. Mangrove production and carbon sinks: A revision of global budget estimates. Global Biogeochemical Cycles , 22: GB2013.
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Boyer, J.N.. 2006. Shifting N and P limitation along a north-south gradient of mangrove estuaries in South Florida. Hydrobiologia , 569(1): 167-177.
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Boyer, J.N., C.R. Kelble, P.B. Ortner, D.T. Rudnick. 2009. Phytoplankton bloom status: Chlorophyll a biomass as an indicator of water quality condition in the southern estuaries of Florida, USA . Ecological Indicators , 9(6): S56-S67 .
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Boyer, J.N., S.K. Dailey, P.J. Gibson, M.T. Rogers, D. Mir-Gonzalez. 2006. The role of dissolved organic matter bioavailability in promoting phytoplankton blooms in Florida Bay. Hydrobiologia , 569(1): 71-85.
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Briceno, H.O., J.N. Boyer. 2009. Climatic Controls on Phytoplankton Biomass in a Sub-tropical Estuary, Florida Bay, USA. Estuaries and Coasts , doi:10.1007/s12237-009-9189-1
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Brody, S.D., S.E. Davis, W.E. Highfield, S.P. Bernhardt. 2008. A Spatial-Temporal Analysis of Section 404 Wetland Permitting in Texas and Florida: Thirteen Years of Impact Along the Coast. Wetlands , 28(1): 107-116.

Browder, J.A., M.B. Robblee. 2009. Pink shrimp as an indicator for restoration of everglades ecosystems. Ecological Indicators , 9(6): S17-S28.
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Cardona-Olarte, P., R.R. Twilley, K.W. Krauss, V.H. Rivera-Monroy. 2006. Responses of neotropical mangrove seedlings grown in monoculture and mixed culture under treatments of hydroperiod and salinity. Hydrobiologia , 569(1): 325-341.
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Castaneda-Moya, E., R.R. Twilley, V.H. Rivera-Monroy, K. Zhang, S.E. Davis, M.S. Ross. 2009. Sediment and Nutrient Deposition Associated with Hurricane Wilma in Mangroves of the Florida Coastal Evergladesane Wilma. Estuaries and Coasts , doi:10.1007/s12237-009-9242-0
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Chambers, R.M., J.W. Fourqurean, S.A. Macko, R. Hoppenot. 2001. Biogeochemical effects of iron availability on primary producers in a shallow marine carbonate environment. Limnology and Oceanography , 46(6): 1278-1286.

Chambers, R.M., K.A. Pederson. 2006. Variation in soil phosphorus, sulfur, and iron pools among south Florida wetlands. Hydrobiologia , 569(1): 63-70.

Chick, J., J.C. Trexler. 2004. Spatial scale and abundance patterns of large fish communities in freshwater marshes of the Florida Everglades. Wetlands , 24(3): 652-664.
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Childers, D.L.. 2006. A synthesis of long-term research by the Florida Coastal Everglades LTER program. Hydrobiologia , 569(1): 531-544.
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Childers, D.L., D. Iwaniec, D. Rondeau, G.A. Rubio, E. Verdon, C.J. Madden. 2006. Responses of sawgrass and spikerush to variation in hydrologic drivers and salinity in southern Everglades marshes. Hydrobiologia , 569(1): 273-292.
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Childers, D.L., J.N. Boyer, S.E. Davis, C.J. Madden, D.T. Rudnick, F.H. Sklar. 2006. Relating precipitation and water management to nutrient concentration patterns in the oligotrophic "upside down" estuaries of the Florida Everglades. Limnology and Oceanography , 51(1): 602-616.
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Childers, D.L., R.F. Doren, G.B. Noe, M. Rugge, L.J. Scinto. 2003. Decadal change in vegetation and soil phosphorus patterns across the Everglades landscape. Journal of Environmental Quality , 32: 344-362.
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Chin, D.A., R.M. Price, V.J. DiFrenna. 2009. Nonlinear Flow in Karst Formations. Ground Water , Early View
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Daoust, R.J., D.L. Childers. 2004. Ecological effects of low-level phosphorus additions on two plant communities in a neotropical freshwater wetland ecosystem. Oecologia , 141(4): 672-686.
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Davis, S.E., C. Coronado-Molina, D.L. Childers, J.W. Day. 2003. Temporally dependent C, N, and P dynamics associated with the decay of Rhizophora mangle L. leaf litter in oligotrophic mangrove wetlands of the Southern Everglades. Aquatic Botany , 75(3): 199-215.
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Davis, S.E., D.L. Childers. 2007. Importance of water source in controlling leaf leaching losses in a dwarf red mangrove (Rhizophora mangle L.) wetland. Estuarine, Coastal and Shelf Science , 71(1-2): 194-201.
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Davis, S.E., D.L. Childers, G.B. Noe. 2006. The contribution of leaching to the rapid release of nutrients and carbon in the early decay of wetland vegetation. Hydrobiologia , 569(1): 87-97.
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Davis, S.E., D.L. Childers, J.W. Day, D.T. Rudnick, F.H. Sklar. 2003. Factors affecting the concentration and flux of materials in two southern Everglades mangrove wetlands. Marine Ecology Progress Series , 253: 85-96.
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Davis, S.E., J.E. Cable, D.L. Childers, C. Coronado-Molina, J.W. Day, C.D. Hittle, C.J. Madden, D. Rudnick, E. Reyes, F. Sklar. 2004. Importance of Episodic Storm Events in Controlling Ecosystem Structure and Function in a Gulf Coast Estuary. Journal of Coastal Research , 20(4): 1198-1208.
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Davis, S.M., D.L. Childers, J. Lorenz, T.E. Hopkins. 2005. A conceptual model of ecological interactions in the mangrove estuaries of the Florida Everglades. Wetlands , 25(4): 832-842.

DeAngelis, D.L., J.C. Trexler, W.F. Loftus. 2005. Life history trade-offs and community dynamics of small fishes in a seasonally pulsed wetland. Canadian Journal of Fisheries and Aquatic Sciences , 62(4): 781-790.
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Doren, R.F.. 2009. Editorial. Ecological Indicators , 9(6): S1.
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Doren, R.F., J.C. Trexler, A.D. Gottlieb, M. Harwell. 2009. Ecological Indicators for System-wide Assessment of the Greater Everglades Ecosystem Restoration Program. Ecological Indicators , 9(6): S2-S16.
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Doren, R.F., J.C. Volin, J.H. Richards. 2009. Invasive exotic plant indicators for ecosystem restoration: An example from the Everglades restoration program. Ecological Indicators , 9(6): S29-S36.
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Doren, R.F., Jennifer H. Richards, J.C. Volin. 2009. A conceptual ecological model to facilitate understanding the role of invasive species in large-scale ecosystem restoration. Ecological Indicators , 9(6): S150-S160.

Dorn, N.J., J.C. Trexler. 2007. Crayfish assemblage shifts in a large drought-prone wetland: the roles of hydrology and competition. Freshwater Biology , 20(1): 113-115.
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Dorn, N.J., J.C. Trexler, E.E. Gaiser. 2006. Exploring the role of large predators in marsh food webs: evidence for a behaviorally-mediated trophic cascade. Hydrobiologia , 569(1): 375-386.
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Evans, S.L., W.T. Anderson, F.J. Jochem. 2006. Spatial variability in Florida Bay particulate organic matter composition: combining flow cytometry with stable isotope analyses. Hydrobiologia , 569(1): 151-165.

Ewe, S.M.L., C.E. Lovelock, I.C. Feller, O.E. Moeri, W. Lee, M.C. Ball. (In Review). Growth and allocation responses of three mangrove species grown with different nutrients and salinities. Ecology

Ewe, S.M.L., E.E. Gaiser, D.L. Childers, D. Iwaniec, V.H. Rivera-Monroy, R.R. Twilley. 2006. Spatial and temporal patterns of aboveground net primary productivity (ANPP) along two freshwater-estuarine transects in the Florida Coastal Everglades . Hydrobiologia , 569(1): 459-474.
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Ewe, S.M.L., L.d.S.L. Sternberg. 2005. Growth and gas exchange patterns of the invasive exotic Schinus terebinthifolius contrasted with native species under controlled saline conditions. Trees , 19(2): 119-128.

Ewe, S.M.L., L.d.S.L. Sternberg. 2007. Water Uptake Patterns of an Invasive Exotic Plant in Coastal Saline Habitats. Journal of Coastal Research , 23(1): 255-264.
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Ewe, S.M.L., L.d.S.L. Sternberg. (In Review). Seasonal gas exchange of the invasive exotic, Schinus terebinthifolius versus native plant species in mangroves and pinelands of Florida. Plant Ecology

Ewe, S.M.L., L.d.S.L. Sternberg, D.L. Childers. 2007. Seasonal plant water uptake patterns in the saline southeast Everglades ecotone. Oecologia , 152(4): 607-616.
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Farber, S., R. Costanza, D.L. Childers, J. Erickson, K. Gross, M. Grove, C. Hopkinson, J. Kahn, S. Pincetl, A. Troy, P. Warren, M. Wilson. 2006. Linking Ecology and Economics for Ecosystem Management. Bioscience , 56(2): 117-129.
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Fourqurean, J.W., J. Schrlau. 2003. Changes in nutrient content and stable isotope ratios of C and N during decomposition of seagrasses and mangrove leaves along a nutrient availability gradient in Florida Bay, USA. Chemistry and Ecology , 19(5): 373-390.

Fourqurean, J.W., J.N. Boyer, M.J. Durako, L.N. Hefty, B.J. Peterson. 2003. Forecasting the response of seagrass distribution to changing water quality: statistical models from monitoring data. Ecological Applications , 13(2): 474-489.
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Fourqurean, J.W., S.P. Escorcia, W.T. Anderson, J.C. Zieman. 2005. Spatial and seasonal variability in elemental content, d13C and d15N of Thalassia testudinum from south Florida and its implication for ecosystem studies. Estuaries , 28(3): 447-461.
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Frankovich, T.A., A.R. Armitage, A. Wachnicka, E.E. Gaiser, J.W. Fourqurean. 2009. Nutrient effects on seagrass epiphyte community structure in Florida Bay. Journal of Phycology , 45: 1010-1020.
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Frankovich, T.A., E.E. Gaiser, J.C. Zieman, A. Wachnicka. 2006. Spatial and temporal distributions of epiphytic diatoms growing on Thalassia testudinum Banks ex Konig: Relationships to water quality. Hydrobiologia , 569(1): 259-271.
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Frankovich, T.A., J.C. Zieman. 2005. Periphyton light transmission relationships in Florida Bay and the Florida Keys. Aquatic Botany , 83(1): 14-30.
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Frederick, P.C., D.E. Gawlik, J.C. Ogden, M.I. Cook, M. Lusk. 2009. The White Ibis and Wood Stork as indicators for restoration of the everglades ecosystem. Ecological Indicators , 9(6): S83-S95.
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Gaiser, E.E.. 2009. Periphyton as an indicator of restoration in the Everglades. Ecological Indicators , 9(6): S37-S45 .
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Gaiser, E.E., A. Zafiris, P.L. Ruiz, F. Tobias, M.S. Ross. 2006. Tracking rates of ecotone migration due to salt-water encroachment using fossil mollusks in coastal South Florida. Hydrobiologia , 569(1): 237-257.
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Gaiser, E.E., J.C. Trexler, J.H. Richards, D.L. Childers, D. Lee, A.L. Edwards, L.J. Scinto, K. Jayachandran, G.B. Noe, R.D. Jones. 2005. Cascading ecological effects of low-level phosphorus enrichment in the Florida Everglades. Journal of Environmental Quality , 34(2): 717-723.
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Gaiser, E.E., J.H. Richards, J.C. Trexler, R.D. Jones, D.L. Childers. 2006. Periphyton responses to eutrophication in the Florida Everglades: Cross-system patterns of structural and compositional change. Limnology and Oceanography , 51(1): 617-630.
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Gaiser, E.E., N. Deyrup, R. Bachmann, L. Battoe, H. Swain. (In Press). Multidecadal climate oscillations detected in a transparency record from a subtropical Florida lake. Limnology and Oceanography

Gaiser, E.E., R. Bachmann, L. Battoe, N. Deyrup, H. Swain. (In Press). Effects of climate variability on transparency and thermal structure in subtropical, monomictic Lake Annie, Florida. Fundamental and Applied Limnology

Gaiser, E.E., R.F. Doren, P. McCormick, S. Newman, J.H. Richards, J.C. Trexler. 2008. Comment on "Estimating Ecological Thresholds for Phosphorus in the Everglades". Environmental Science & Technology , 42: 6770-6771.
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Gao, M., B.R.T. Simoneit, M. Gantar, R. Jaffe. 2007. Occurrence and distribution of novel botryococcene hydrocarbons in freshwater wetlands of the Florida Everglades. Chemosphere , 70: 224-236.
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Gil, M., A.R. Armitage, J.W. Fourqurean. 2006. Nutrient impacts on epifaunal density and species composition in a subtropical seagrass bed. Hydrobiologia , 569(1): 437-447.
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Glibert, P.M., J.N. Boyer, C. Heil, C.J. Madden, B. Sturgis, C.S. Wazniak. (In Press). Blooms in lagoons: Fundamentally different from those of riverine-dominated estuaries. Estuaries and Coasts

Gottlieb, A.D., J.H. Richards, E.E. Gaiser. 2006. Comparative study of periphyton community structure in long and short-hydroperiod Everglades marshes. Hydrobiologia , 569(1): 195-207.
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Green, D., J.C. Trexler, J.J. Lorenz, C.C. McIvor, T.E. Philippi. 2006. Spatial patterns of fish communities along two estuarine gradients in southern Florida . Hydrobiologia , 569(1): 387-399.
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Hajje, N., R. Jaffe. 2006. Molecular characterization of Cladium peat from the Florida Everglades: biomarker associations with humic fractions. Hydrobiologia , 569(1): 99-112.

Harwell, M., B. Sharfstein. 2009. Submerged aquatic vegetation and bulrush in Lake Okeechobee as indicators of greater Everglades ecosystem restoration. Ecological Indicators , 9(6): S46-S55.

Heithaus, M.R., B. Delius, A.J. Wirsing, M. Dunphy-Daly. 2009. Physical factors influencing the distribution of a top predator in a subtropical oligotrophic estuary. Limnology and Oceanography , 54(2): 472-482.
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Herbert, D.A., J.W. Fourqurean. 2008. Ecosystem structure and function still altered two decades after short-term fertilization of a seagrass meadow. Ecosystems , 11: 688-700.
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Herbert, D.A., J.W. Fourqurean. 2009. Phosphorus availability and salinity control productivity and demography of the seagrass Thalassia testudinum in Florida Bay. Estuaries and Coasts , 32: 188-201.

Ikenaga, M., R. Guevara, C. Pisani, A. Dean, J.N. Boyer. (In Press). Changes in community structure of sediment bacteria along the Everglades marsh, mangrove forest, and Florida Bay seagrass meadows gradient. Microbial Ecology

Iwaniec, D., D.L. Childers, D. Rondeau, C.J. Madden, C.J. Saunders. 2006. Effects of hydrologic and water quality drivers on periphyton dynamics in the southern Everglades. Hydrobiologia , 569(1): 223-235.
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Jaffe, R., A.I. Rushdi, P.M. Medeiros, B.R.T. Simoneit. 2006. Natural product biomarkers as indicators of sources and transport of sedimentary organic matter in a subtropical river. Chemosphere , 64(11): 1870-1884.

Jaffe, R., D. McKnight, N. Maie, R. Cory, W.H. McDowell, J.L. Campbell. 2008. Spatial and temporal variations in DOM composition in ecosystems: The importance of long-term monitoring of optical properties. Journal of Geophysical Research - Biogeosciences , 113: G04032.
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Jaffe, R., J.N. Boyer, X. Lu, N. Maie, C. Yang, N.M. Scully, S. Mock. 2004. Source characterization of dissolved organic matter in a subtropical mangrove-dominated estuary by fluorescence analysis. Marine Chemistry , 84(3-4): 195-210.
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Jaffe, R., R. Mead, M.E. Hernandez, M.C. Peralba, O.A. DiGuida. 2001. Origin and transport of sedimentary organic matter in two subtropical estuaries: A comparative, biomarker-based study. Organic Geochemistry , 32(4): 507-526.
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Jones, V., C.J. Ruddell, G. Wainwright, H.H. Rees, R. Jaffe, G.A. Wolff. 2004. One-dimensional and two dimensional polyacrylamide gel electrophoresis: a tool for protein characterization in aquatic samples. Marine Chemistry , 85(1-2): 63-73.

Jones, V., K. Parish, A. Thomson, G.A. Wolff, N. Maie, R. Jaffe. 2006. Molecular characterization of proteinaceous material in the Florida coastal Everglades. Hydrobiologia , 569(1): 129-133.
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Jones, V., M.J. Collins, K.E.H. Penkman, R. Jaffe, G.A. Wolff. 2005. An assessment of the microbial contribution to aquatic dissolved organic nitrogen using amino acid enantiomeric ratios. Organic Geochemistry , 36(7): 1099-1107.

Krauss, K.W., R.R. Twilley, T.W. Doyle, E.S. Gardiner. 2006. Leaf gas exchange characteristics of three neotropical mangrove species in response to varying hydroperiod. Tree Physiology , 26: 959-968.

Krauss, K.W., T.W. Doyle, R.R. Twilley, T.J. Smith, K.R.T. Whelan, J.K. Sullivan. 2005. Woody Debris in the Mangrove Forests of South Florida. Biotropica , 37(1): 9-15.
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Krauss, K.W., T.W. Doyle, R.R. Twilley, V.H. Rivera-Monroy, J.K. Sullivan. 2006. Evaluating the relative contributions of hydroperiod and soil fertility on growth of south Florida mangroves. Hydrobiologia , 569(1): 311-324.
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Leonard, L., A.L. Croft, D.L. Childers, S. Mitchell-Bruker, H. Solo-Gabriele, M.S. Ross. 2006. Characteristics of surface-water flows in the ridge and slough landscape of Everglades National Park: implications for particulate transport. Hydrobiologia , 569(1): 5-22.
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Liston, S.E.. 2006. Interactions between nutrient availability and hydroperiod shape macroinvertebrate communities in Florida Everglades marshes. Hydrobiologia , 569(1): 343-357.
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Liston, S.E., J.C. Trexler. 2005. Spatiotemporal patterns in community structure of macroinvertebrates inhabiting calcareous periphyton mats. Journal of the North American Benthological Society , 24(4): 832-844.
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Liston, S.E., S. Newman, J.C. Trexler. 2008. Macroinvertebrate Community Response to Eutrophication in an Oligotrophic Wetland: An in situ Mesocosm Experiment. Wetlands , 28(3): 686-694.
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Lockwood, J.L., M.S. Ross, J.P. Sah. 2003. Smoke on the water: the interplay of fire and water flow on Everglades restoration. Frontiers in Ecology and the Environment , 1(9): 462-468.
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Lorenz, J.J., B. Langan-Mulrooney, P. Frezza, R.G. Harvey, F.J. Mazzotti. 2009. Roseate spoonbill reproduction as an indicator for restoration of the Everglades and the Everglades estuaries. Ecological Indicators , 9(6): S96-S107.

Lorenz, J.J., J.E. Serafy. 2006. Subtroprical wetland fish assemblages and changing salinity regimes: Implications for Everglades restoration. Hydrobiologia , 569(1): 401-422.

Lu, X.Q., N. Maie, J.V. Hanna, D.L. Childers, R. Jaffe. 2003. Molecular characterization of dissolved organic matter in freshwater wetlands of the Florida Everglades. Water Research , 37(11): 2599-2606.
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Madden, C.J., D.T. Rudnick, A.A. McDonald, K.M. Cunniff, J.W. Fourqurean. 2009. Ecological indicators for assessing and communicating seagrass status and trends in Florida Bay. Ecological Indicators , 9(6): S68-S82. doi:10.1016/j.ecolind.2009.02.004.
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Maie, N., C. Yang, T. Miyoshi, K. Parish, R. Jaffe. 2005. Chemical characteristics of dissolved organic matter in an oligotrophic subtropical wetland/estuarine ecosystem. Limnology and Oceanography , 50(1): 23-35.

Maie, N., J.N. Boyer, C. Yang, R. Jaffe. 2006. Spatial, geomorphological, and seasonal variability of CDOM in estuaries of the Florida Coastal Everglades. Hydrobiologia , 569(1): 135 - 150.
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Maie, N., K. Parish, A. Watanabe, H. Knicker, R. Benner, T. Abe, K. Kaiser, R. Jaffe. 2006. Characterization of dissolved organic nitrogen in an oligotrophic subtropical coastal ecosystem. Geochimica et Cosmochimica Acta , 70(17): 4491-4506.
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Maie, N., N.M. Scully, O. Pisani, R. Jaffe. 2007. Composition of a protein-like fluorophore of dissolved organic matter in coastal wetland and estuarine ecosystems. Water Research , 41: 563-570.
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Maie, N., O. Pisani, R. Jaffe. 2008. Mangrove tannins in aquatic ecosystems: their fate and possible role in dissolved organic nitrogen cycling. Limnology & Oceanography , 53(1): 160-171.
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Maie, N., R. Jaffe, M. Toshikazu, D.L. Childers. 2006. Quantitative and qualitative aspects of dissolved organic carbon leached from senescent plants in an oligotrophic wetland. Biogeochemistry , 78(3): 285-314.
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Mazzotti, F.J., G.R. Best, L.A. Brandt, M.S. Cherkiss, B.M. Jeffery, K.G. Rice. 2009. Alligators and crocodiles as indicators for restoration of Everglades ecosystems. Ecological Indicators , 9(6): S137-S149.
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McElroy, T.C., J.C. Trexler, K.L. Kandl. (In Review). Temporal dynamics of population genetic structure reveal colonization dynamics of eastern mosquitofish in a dynamic aquatic landscape. Molecular Ecology

Mead, R.N., Y. Xu, J. Chong, R. Jaffe. 2005. Sedimentary organic matter source assessment in a sub-tropical wetland and estuarine environment using the molecular distribution and carbon isotopic composition of n-alkanes. Organic Geochemistry , 36(3): 363-370.
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Neto, R., R.N. Mead, W.J. Louda, R. Jaffe. 2006. Organic biogeochemistry of detrital flocculent material (floc) in a subtropical, coastal wetland. Biogeochemistry , 77: 283-304.

Noe, G.B., D.L. Childers. 2007. Phosphorus budgets in Everglades wetland ecosystems: The effects of hydrology and nutrient enrichment. Wetlands Ecology and Management , 15: 189-205.
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Noe, G.B., D.L. Childers, A.L. Edwards, E. Gaiser, K. Jayachandran, D. Lee, J. Meeder, J. Richards, L.J. Scinto, J.C. Trexler, R.D. Jones. 2002. Short-term changes in phosphorus storage in an oligotrophic Everglades wetland ecosystem receiving experimental nutrient enrichment. Biogeochemistry , 59(3): 239-267.
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Noe, G.B., L.J. Scinto, J. Taylor, D.L. Childers, R.D. Jones. 2003. Phosphorus cycling and partitioning in an oligotrophic Everglades wetland ecosystem: a radioisotope tracing study. Freshwater Biology , 48(11): 1993-2008.

Ogden, L.. 2008. The Everglades Ecosystem and the Politics of Nature. American Anthropologist , 110(1): 21-32.

Poret, N., R.R. Twilley, V.H. Rivera-Monroy, C. Coronado-Molina. 2007. Belowground Decomposition of Mangrove Roots in Florida Coastal Everglades. Estuaries and Coasts. Estuaries and Coasts , 30(3): 491-496.
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Price, R.M., P.K. Swart, H.E. Willoughby. 2008. Seasonal and spatial variation in the stable isotopic composition (d18O and dD) of precipitation in south Florida. Journal of Hydrology , 358: 193-205.

Price, R.M., P.K. Swart, J.W. Fourqurean. 2006. Coastal groundwater discharge - an additional source of phosphorus for the oligotrophic wetlands of the Everglades. Hydrobiologia , 569(1): 23-36.

Rehage, J.S., J.C. Trexler. 2006. Assessing the net effect of anthropogenic disturbance on aquatic communities in wetlands: Community structure relative to distance from canals. Hydrobiologia , 569(1): 359-373.
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Rehage, J.S., W.F. Loftus. 2007. Seasonal fish community variation in headwater mangrove creeks in the southwestern Everglades: an examination of their role as dry-down refuges. Bulletin of Marine Science , 80(3): 625-645.
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Rivera-Monroy, V.H., K. de Mutsert, R.R. Twilley, E. Castaneda-Moya, M.M. Romigh, S.E. Davis. 2007. Patterns of nutrient exchange in a riverine mangrove forest in the Shark River Estuary, Florida, USA. Hidrobiologica , 17(2): 169-178.
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Rivera-Monroy, V.H., R.R. Twilley, D. Bone, D.L. Childers, C. Coronado-Molina, I.C. Feller, J.A. Herrerra-Silviera, R. Jaffe, J.E. Mancera, E. Rejmankova, J.E. Salisbury. 2004. A conceptual framework to develop long-term ecological research and management objectives in the wider Caribbean Region. BioScience , 54(9): 843-856.
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Rivera-Monroy, V.H., R.R. Twilley, J.E. Mancera, A. Alcantara-Eguren, E. Castaneda-Moya, Casas O. Monroy, P. Reyes, J. Restrepo, L. Perdomo, E. Campos, G. Cotes, E. Villoria. 2007. Adventures and Misfortunes in Macondo: Rehabilitation of the Cienaga Grande. Ecotropicos , 19(2): 72-93.
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Rogers, M.T., J.N. Boyer, F.J. Jochem. (In Press). Bacterial abundance, growth rates, and grazing losses in Florida Bay. Aquatic Microbial Ecology

Romero, L.M., J.W. Fourqurean, T.J. Smith. 2005. Changes in mass and nutrient content of wood during decomposition in a South Florida mangrove forest. Journal of Ecology , 93(3): 618-631.

Romigh, M.M., S.E. Davis, V.H. Rivera-Monroy, R.R. Twilley. 2006. Flux of organic carbon in a riverine mangrove wetland in the Florida Coastal Everglades. Hydrobiologia , 569(1): 505-516.
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Ross, M.S., D.R. Reed, J.P. Sah, P.L. Ruiz, M. Lewin. 2003. Vegetation:environment relationships and water management in Shark Slough, Everglades National Park. Wetlands Ecology and Management , 11(5): 291-303.

Ross, M.S., J.J. O'Brien, G. Ford, K. Zhang, A. Morkill. 2009. Disturbance and the rising tide: the challenge of biodiversity management on low-island ecosystems. Frontiers in Ecology and the Environment , e-View: doi: 10.1890/070221 .

Ross, M.S., P.L. Ruiz, J.P. Sah, E. Hanan. 2009. Chilling damage in a changing climate in coastal landscapes of the sub-tropical zone: a case study from south Florida. Global Change Biology , 15(7): 1817-1832.
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Ross, M.S., S. Mitchell-Bruker, J.P. Sah, S. Stothoff, P.L. Ruiz, D.R. Reed, K. Jayachandran, C.L. Coultas. 2006. Interaction of hydrology and nutrient limitation in the ridge and slough landscape of the southern Everglades. Hydrobiologia , 569(1): 37-59.

Rubio, G.A., D.L. Childers. 2006. Controls of Herbaceous Litter Decomposition in the Estuarine Ecotones of the Florida Everglades. Estuaries and Coasts , 29(2): 257-268.
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Ruiz-Halpern, S., S.A. Macko, J.W. Fourqurean. 2008. The effects of manipulation of sedimentary iron and organic matter on sediment biogeochemistry and seagrasses in a subtropical carbonate environment. Biogeochemistry , 87: 113-126.
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Sargeant, B., J.C. Trexler, E.E. Gaiser. (In Press). Biotic and Abiotic Determinants of Intermediate-Consumer Trophic Diversity in the Florida Everglades. Marine & Freshwater Research

Saunders, C.J., J.P. Megonigal, J.F. Reynolds. 2006. Comparison of belowground biomass in C3- and C4-dominated mixed communities in a Chesapeake Bay brackish marsh. Plant and Soil , 280: 305-322.

Saunders, C.J., M. Gao, J. Lynch, R. Jaffe, D.L. Childers. 2006. Using soil profiles of seeds and molecular markers as proxies for sawgrass and wet prairie slough vegetation in Shark Slough, Everglades National Park. Hydrobiologia , 569(1): 475-492.
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Scully, N.M., N. Maie, S. Dailey, J. Boyer, R.D. Jones, R. Jaffe. 2004. Early diagenesis of plant-derived dissolved organic matter along a wetland, mangrove, estuary ecotone. Limnology and Oceanography , 49(5): 1667-1678.
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Simard, M., K. Zhang, V.H. Rivera-Monroy, M.S. Ross, P.L. Ruiz, E. Castaneda-Moya, R.R. Twilley, E. Rodriguez. 2006. Mapping Height and Biomass of Mangrove Forests in Everglades National Park with SRTM Elevation Data. Photogrammetric Engineering and Remote Sensing , 72(3): 299-311.

Simoneit, B.R.T., Y. Xu, R. Neto, J. Cloutier, R. Jaffe. 2009. Photochemical alteration of 3-oxygenated triterpenoids: Implications for the origin of 3,4-seco-triterpenoids in sediments. Chemosphere , 74: 543-550.
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Smith, T.J., G. Anderson, K. Balentine, G. Tiling, G.A. Ward, K. Whelan. 2009. Cumulative Impacts of Hurricanes on Florida Mangrove Ecosystems: Sediment Deposition, Storm Surges and Vegetation. Wetlands , 29(1): 24-34.

Sobrado, M.A., S.M.L. Ewe. 2006. Ecophysiological characteristics of Avicennia germinans and Laguncularia racemosa coexisting in a scrub mangrove forest at the Indian River Lagoon, Florida. Trees - Structure and Function , 20(6): 679-687.
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Stalker, J.C., R.M. Price, P.K. Swart. 2009. Determining Spatial and Temporal Inputs of Freshwater, Including Submarine Groundwater Discharge, to a Subtropical Estuary Using Geochemical Tracers, Biscayne Bay, South Florida. Estuaries and Coasts , 32(4): 694-708.
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Statzell-Tallman, A., C. Belloch, J.W. Fell. 2008. Kwoniellamangroviensis gen.nov., sp.nov. (Tremellales , Basidiomycota ), a teleomorphic yeast from mangrove habitats in the Florida Everglades and Bahamas. FEMS Yeast Research , 8(1): 103-113.
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Stevenson, C., D.L. Childers. 2004. Hydroperiod and seasonal effects on fish decomposition in an oligotrophic Everglades marsh. Wetlands , 24(3): 529-537.
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Thomas, S.E., E.E. Gaiser, F. Tobias. 2006. Effects of shading on calcareous benthic periphyton in a short-hydroperiod oligotrophic wetland (Everglades, FL, USA). Hydrobiologia , 569(1): 209-221.
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Thomas, S.E., E.E. Gaiser, M. Gantar, L.J. Scinto. 2006. Quantifying the response of calcareous periphyton crusts to rehydration: a microcosm study (Florida Everglades). Aquatic Botany , 84: 317-323.
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Tobias, F., E.E. Gaiser. 2006. Taxonomy and distribution of taxa in the genus Gomphonema from the Florida Everglades, U.S.A.. Diatom Research , 21: 379-405.
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Torres, L.G., M.R. Heithaus, B. Delius. 2006. Influence of teleost abundance on the distribution and abundance of sharks in Florida Bay, USA. Hydrobiologia , 569(1): 449-455.
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Trexler, J.C., C. Goss. 2009. Aquatic fauna as indicators for Everglades restoration: Applying dynamic targets in assessments. Ecological Indicators , 9(6): S108-S119 .
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Trexler, J.C., E.E. Gaiser, D.L. Childers. 2006. Interaction of hydrology and nutrients in controlling ecosystem function in oligotrophic coastal environments of South Florida. Hydrobiologia , 569(1): 1-2.
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Trexler, J.C., W.F. Loftus, S. Perry. 2005. Disturbance frequency and community structure in a twenty-five year intervention study. Oecologia , 145(1): 140-152.
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Troxler-Gann, T.. 2002. Response of Everglades tree islands to increased freshwater flow (Florida). Ecological Restoration , 20(3): 211-212.
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Troxler-Gann, T., D.L. Childers. 2006. Relationships between hydrology and soils describe vegetation patterns in seasonally flooded tree islands of the southern Everglades, Florida. Plant and Soil , 279(1-2): 271-286.
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Troxler-Gann, T., D.L. Childers, D. Rondeau. 2005. Ecosystem structure, nutrient dynamics, and hydrologic relationships in tree islands of the southern Everglades, Florida, USA. Forest Ecology & Management , 214(1-3): 11-27.
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Tsai, C., R.R. Twilley, C.S. Willson, V.H. Rivera-Monroy. 2008. Application of the HYMAN Model to evaluate water and salt budgets in Shark River Estuary. Ecological Engineering

Twilley, R.R., V.H. Rivera-Monroy. 2005. Developing performance measures of mangrove wetlands using simulation models of hydrology, nutrient biogeochemistry, and community dynamics. Journal of Coastal Research , 40: 79-95.
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Volety, A.K., M. Savarese, S.G. Tolley, W.S. Arnold, P. Sime, P. Goodman, R.H. Chamberlain, P.H. Doering. 2009. Eastern oysters (Crassostrea virginica) as an indicator for restoration of Everglades Ecosystems. Ecological Indicators , 9(6): S120-S136.
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Wachnicka, A., E.E. Gaiser. 2007. Morphological characterization of Amphora and Seminavis (Bacillariophyceae) from South Florida, U.S.A.. Diatom Research , 22: 387-455.
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Ward, G.A., T.J. Smith, K.R.T. Whelan, T.W. Doyle. 2006. Regional processes in mangrove ecosystems: spatial scaling relationships, biomass, and turnover rates following catastrophic disturbance. Hydrobiologia , 569(1): 517-527.

Wetzel, P., A.G. van der Valk, S. Newman, D.E. Gawlik, T. Troxler-Gann, C. Coronado-Molina, D.L. Childers, F.H. Sklar. 2005. Maintaining tree islands in the Florida Everglades: nutrient redistribution is the key. Frontiers in Ecology , 3(7): 370-376.
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Williams, A.J., J.C. Trexler. 2006. A preliminary analysis of the correlation of food-web characteristics with hydrology and nutrient gradients in the southern Everglades. Hydrobiologia , 569(1): 493-504.
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Williams, C.J., F.J. Jochem. 2006. Ectoenzyme kinetics in Florida Bay: Implications for bacterial carbon source and nutrient status. Hydrobiologia , 569(1): 113-127.
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Williams, C.J., J.N. Boyer, F.J. Jochem. (In Review). Sequential hurricane disturbances to the pelagic Florida Bay microbial system: Consequences for aminopeptidase activity and microbial nitrogen cycling. Marine Ecology Progress Series

Williams, C.J., J.N. Boyer, F.J. Jochem. 2008. Indirect hurricane effects on resource availability and microbial communities in a subtropical wetland - estuary transition zone. Estuaries and Coasts , 31(1): 204-214.

Williams, C.J., J.N. Boyer, F.J. Jochem. 2009. Microbial activity and carbon, nitrogen, and phosphorus content in a subtropical seagrass estuary (Florida Bay): evidence for limited bacterial use of seagrass production. Marine Biology , 156(3): 341-353.
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Williams, C.J., R. Jaffe, W.T. Anderson, F.J. Jochem. 2009. Importance of seagrass as a carbon source for heterotrophic bacteria in a subtropical estuary (Florida Bay). Estuaries, Coastal and Shelf Science , 85: 507-514.
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Wozniak, J., D.L. Childers, W.T. Anderson, D.T. Rudnick, C.J. Madden. 2008. An In Situ Mesocosm Method for Quantifying Nitrogen Cycling Rates in Oligotrophic Wetlands Using 15N Tracer Techniques. Wetlands , 28(2): 502-512.
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Xu, Y., C.W. Holmes, R. Jaffe. 2007. Paleoenvironmental assessment of recent environmental changes in Florida Bay, USA: A biomarker based study. Estuarine, Coastal and Shelf Science , 73(1-2): 201-210.

Xu, Y., R. Jaffe. 2007. Lipid biomarkers in suspended particulates from a subtropical estuary: Assessment of seasonal changes in sources and transport of organic matter. Marine Environmental Research , 64: 666-678.
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Xu, Y., R. Jaffe, A. Wachnicka, E.E. Gaiser. 2006. Occurrence of C25 highly branched isoprenoids in Florida Bay: Paleoenvironmental indicators of diatom-derived organic matter inputs. Organic Geochemistry , 37(7): 847-859.
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Xu, Y., R.N. Mead, R. Jaffe. 2006. A molecular marker based assessment of sedimentary organic matter sources and distributions in Florida Bay. Hydrobiologia , 569(1): 179-192.
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Yamashita, Y., R. Jaffe. 2008. Characterizing the Interactions between Trace Metals and Dissolved Organic Matter Using Excitation-Emission Matrix and Parallel Factor Analysis. Environmental Science & Technology , 42(19): 7374-7379.
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Zhang, K., M. Simard, M.S. Ross, V.H. Rivera-Monroy, P. Houle, P.L. Ruiz, R.R. Twilley, K. Whelan. 2008. Airborne Laser Scanning Quantification of Disturbances from Hurricanes and Lightning Strikes to Mangrove Forests in Everglades National Park, USA. Sensors , 8(4): 2262-2292.
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Zieman, J.C., J.W. Fourqurean, T.A. Frankovich. 2004. Reply to B. E. Lapointe and P. J. Bariles comment on our paper Seagrass die-off in Florida Bay: long term trends in abundance and growth of turtlegrass, Thalassia testudinum.. Estuaries , 27(1): 165-172.
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Master's Theses       back to the top
Barr, Dane . 2006. Incorporating tidal energy advection into the energy balance for a mangrove forest in the Florida Everglades. Master's thesis, University of Virginia.

Byron, Dorothy A.. 2006. Determining the physiological response of a subtropical seagrass, Thalassia Testudinum, to salinity stress using pulse amplitude modulated (PAM) fluorometry. Master's thesis, Florida International University.

Cormier, Nicole . 2003. Belowground productivity in mangrove forests of Pohnpei and Kosrae, Federated States of Micronesia. Master's thesis, University of Louisiana at Lafayette.

Cornett, Virginia C.. 2006. Spatial distribution of submerged aquatic vegetation in the Shark River Estuary and implications for understanding movement and feeding patterns of manatees (Tichechus manatus latirostris). Master's thesis, Florida International University.

Delius, Bryan K.. 2007. Distribution and trophic position of juvenile bull sharks in an oligotrophic estuary. Master's thesis, Florida International University.

Dewsbury, Bryan M.. 2006. Artificially induced aggregation of fish and their effects on nutrient regimes and primary producers in an oligotrophic subtropical estuary. Master's thesis, Florida International University.

Ferdie, Meredith . 2002. Nutrient Limitation of Benthic Primary Production in the Upper Florida Keys. Master's thesis, Florida International University.

Gann, Tiffany Troxler. 2001. Investigating tree island community response to increased freshwater flow in the Southern Everglades. Master's thesis, Florida International University.

Gibson, Patrick J.. 2005. Volume transport and nutrient loading between Florida Bay and the Florida Keys National Marine Sanctuary though Long Key Channel. Master's thesis, Florida International University.

Goss, Charles . 2006. Fish colonization of temporary wetlands in the context of the Everglades landscape. Master's thesis, Florida International University.

Green, David P.J.. 2007. Community structure and physiological stresses of oligohaline zone fishes in south Florida. Master's thesis, Florida International University.

Hanan, Erin J.. 2008. Multi-Scaled Patterning of Plant-Soil-Water Interactions across Tree Islands and Marshes within the Prairie and Slough Landscapes of Everglades National Park. Master's thesis, Florida International University.

Iwaniec, David M.. 2008. Regulation and Organization of Periphyton from the Florida Everglades, U.S.A.. Master's thesis, Florida International University.

Juszli, Gregory M.. 2006. Patterns in belowground primary productivity and belowground biomass in marshes of the Everglades' oligohaline ecotone. Master's thesis, Florida International University.

Mir-Gonzalez, Danielle . 2007. Groundwater nutrient availability controls on nearshore benthic community structure in Biscayne Bay, Florida. Master's thesis, Florida International University.

Poret, Nicole . 2005. Belowground Decomposition of Mangrove Roots in the Florida Coastal Everglades. Master's thesis, University of Louisiana at Lafayette.

Reed, David . 2007. Effects of hydrology and light on seedling establishment and growth of four wetland tree species in tree islands of northern Shark Slough, Everglades National Park. Master's thesis, Florida International University.

Rogers, Matthew . 2005. Bacterivory, growth rates, and bacterial abundance in Florida Bay. Master's thesis, Florida International University.

Romigh, Melissa . 2005. Organic Carbon Flux at the Mangrove Soil-Water Column Interface in the Florida Coastal Everglades. Master's thesis, Texas A&M University.

Rubio, Gustavo . 2004. Macrophyte Decomposition and Litter Fall Dynamics in the Everglades Ecotones. Master's thesis, Florida International University.

Ruiz Halpern, Sergio . 2006. Response of the seagrass Thalassia testudinum to experimental manipulations of sedimentary iron and organic matter in a subtropical carbonate environment. Master's thesis, Florida International University.

Sanchez, Michelle. 2009. Distribution of Particle Organic Material in Biscayne Bay. Master's thesis, Florida International University.

Stanaway, Kathryn . 2005. The effects of microbial mats on sediment nutrient fluxes in Florida Bay, USA. Master's thesis, Florida International University.

Stevenson, Christine Elizabeth. 2001. Fish decomposition and the role of fish detritus in nutrient cycling within an oligotrophic Everglades freshwater marsh. Master's thesis, Florida International University.

Stuhar, Martha Elizabeth. 2004. Relationship between soil moisture and nutrient availability in tree islands of Shark Slough, Everglades National Park. Master's thesis, Florida International University.

Tsai, Cheng-Feng . 2008. Application of the HYMAN Model to evaluate the water and salt budgets in three mangrove sites along Shark River, Everglades. Master's thesis, Louisiana State University.

Vlaar, Theo . 2005. Hydrologic conditions of the Shark Estuary in relation to regional physical forcings in the Everglades. Master's thesis, Larenstein University.

Williams, Alissa Jade. 2004. Hydrology and primary production influence food-web patterns in the Florida Everglades. Master's thesis, Florida International University.

Wood, Adam . 2005. Dynamics of detrital particulate organic material in the ridge and slough landscape of the Everglades. Master's thesis, Florida International University.

Yang, Chengyong . 2002. Molecular characterization of dissolved organic matter in the Florida coastal Everglades. Master's thesis, Florida International University.

Ph.D. Dissertations       back to the top
Barr, Jordan G.. 2005. Carbon assimilation by riverine mangroves in the Florida Everglades. Ph.D. dissertation, University of Virginia.

Cardona-Olarte, Pablo . 2004. Responses of neotropical mangrove seedlings to environmental regulators. Ph.D. dissertation, University of Louisiana at Lafayette.

Evans, Samantha . 2009. Carbon and Nitrogen Stable Isotope Patterns in South Florida Coastal Ecosystems: Modern and Paleoceanographic Perspectives. Ph.D. dissertation, Florida International University.

Frankovich, Thomas A.. 2006. Epiphyte light transmission relationships and biological and physicochemical influences on seagrass epiphyte standing stock and community composition. Ph.D. dissertation, University of Virginia.

Gao, Min . 2007. Chemical characterization of soil organic matter in an oligotrophic, subtropical, freshwater wetland system: Sources, diagenesis and preservation. Ph.D. dissertation, Florida International University.

Gottlieb, Andrew David. 2003. Short and long hydroperiod Everglades periphyton mats: community characterization and experimental hydroperiod manipulation. Ph.D. dissertation, Florida International University.

Krauss, Kenneth W.. 2004. Growth, photosynthetic, and water use characteristics of south Florida mangrove vegetation in response to varying hydroperiod. Ph.D. dissertation, University of Louisiana at Lafayette.

Mancera-Pineda, Jose Ernesto. 2003. The Contribution of Mangrove Outwelling to Coastal Food Webs as a Function of Environmental Settings. Ph.D. dissertation, University of Louisiana at Lafayette.

Mead, Ralph N.. 2003. Organic matter dynamics in the Florida coastal Everglades : A molecular marker and isotopic approach. Ph.D. dissertation, Florida International University.

Quillen, Amanda Kay. 2009. Diatom-Based Paleolimnological Reconstruction of Quaternary Environments in a Florida Sinkhole Lake. Ph.D. dissertation, Florida International University.

Smith, Shawn Elizabeth. 2004. Defining the role of floating periphyton mats in shaping food-web dynamics in the Florida Everglades. Ph.D. dissertation, Florida International University.

Stalker, Jeremy. 2008. Hydrological Dynamics Between a Coastal Aquifer and the Adjacent Estuarine System, Biscayne Bay, South Florida. Ph.D. dissertation, Florida International University.

Troxler-Gann, Tiffany . 2005. Investigating biogeochemical connectivity in a complex wetland landscape: N sources and mechanisms of N sequestration in forested islands of the southern Everglades. Ph.D. dissertation, Florida International University.

Wachnicka, Ania . 2009. Quantitative Diatom-Based Reconstruction of Paleoenvironmental Conditions in Florida Bay and Biscayne Bay, U.S.A.. Ph.D. dissertation, Florida International University.

Whelan, Kevin . 2005. The successional dynamics of lightning-initiated canopy gaps in the mangrove forests of Shark River, Everglades National Park, USA. Ph.D. dissertation, Florida International University.

Williams, Clayton . 2008. Relative significance of pelagic, benthic, and allochthonous organic matter to microbial carbon cycling in a phosphorus-depleted subtropical estuary (Florida Bay). Ph.D. dissertation, Florida International University.

Wozniak, Jeffrey R.. 2006. Quantifying nitrogen cycling rates in freshwater marshes of the southern Everglades using 15N tracer techniques. Ph.D. dissertation, Florida International University.

Xu, Yunping . 2005. Origin, transport and fate of organic matter in Florida Bay: A biomarker record of historical environmental changes. Ph.D. dissertation, Florida International University.

Reports       back to the top
Boyer, J.N., B. Keller. (In Press). Nutrient Dynamics . In Nuttle, W.K. (ed.) Synthesis of Research Activities in Florida Bay. Florida Marine Research Institute Technical Report TR-XX.

Boyer, J.N., P.J. Gibson. 2005. Nutrient Mass Flux between Florida Bay and the Florida Keys National Marine Sanctuary. National Oceanic Atmospheric Administration Technical Report # NA16OP2551
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Deng, Y., H. Solo-Gabriele, M. Laas, A. Omae, G. He. 2007. Documenting the Importance of Water Flow to Everglades Landscape Structure and Sediment Transport in Everglades National Park, Phase II. Everglades National Park, Homestead, FL
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He, G., H. Solo-Gabriele, M. Laas. 2008. Documenting the Importance of Water Flow to Everglades Landscape Structure and Sediment Transport in Everglades National Park, Phase III. Everglades National Park, Homestead, FL
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Leonard, L., A.L. Croft, G. He, H. Solo-Gabriele, M. Laas, D.L. Childers, D. Rondeau, G.D. Losada, R. Travieso, V. Engel. 2008. Recover MAP Module Activity Title: Greater Everglades Module: Field Methods Development & Implementation for Ridge and Slough Flow Patterns. South Florida Water Management District, West Palm Beach, FL
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Madden, C.J., A.A. McDonald. (In Review). Technical Documentation for the Florida Bay Seagrass Community Model. South Florida Water Management Technical Report Series

Price, R.M., J.L. Jolicoeur, T.J. Smith, V. Engel. 2008. Determining Nutrient Concentrations in Groundwater Along the Mangrove Ecotone Region of Shark River Slough. South Florida Water Management District, West Palm Beach, FL
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Rivera-Monroy, V.H., R.R. Twilley, E. Castaneda. 2005. Large-scale assessment of landscape changes and recovery in forest structure of mangrove wetlands subject to human (shrimp mariculture, silviculture, agricultural chemicals), freshwater diversion, and natural disturbances (hurricanes, other severe storms, climate and sea level change) using enhanced Shuttle Radar Topography Mission data. Interim Report. Project NASA/IDS/03-0151-0113. Contract No. 593265
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Saunders, C.J., D.L. Childers, W.T. Anderson, J. Lynch, R. Jaffe. 2007. Understanding Cladium jamaicense dynamics over the last century in ENP using simulation modeling and paleoecological data - 24 month Report. Everglades National Park, National Park Service (#EVER-00278)
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Saunders, C.J., R. Jaffe, M. Gao, W.T. Anderson, J. Lynch, D.L. Childers. 2008. Decadal to millennial dynamics of ridge-and-slough wetlands in Shark Slough, Everglades National Park: integrating paleoecological data and simulation modeling. Final Report submitted to the National Park Service/Everglades National Park
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Smith, T.J., G. Anderson, G. Tiling. 2007. A Tale of Two Storms: Surges and Sediment Deposition from Hurricanes Andrew and Wilma in Florida Southwest Coast Mangrove Forests. Pages 169-174 In Farris, G.S., G.J. Smith, M.P. Crane, C.R. Demas, L.L. Robbins and D.L. Lavoie (Eds.). Science and the Storms: the USGS Response to the Hurricanes of 2005. USGS Circular 1306. U.S. Geological Survey, Reston, VA
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Ward, G.A., T.J. Smith. 2007. Predicting Mangrove Forest Recovery on the Southwest Coast of Florida Following the Impact of Hurricane Wilma, October 2005. Pages 175-182 In Farris, G.S., G.J. Smith, M.P. Crane, C.R. Demas, L.L. Robbins and D.L. Lavoie (Eds.). Science and the Storms: the USGS Response to the Hurricanes of 2005. USGS Circular 1306. U.S. Geological Survey, Reston, VA.

Number of books = 3
Number of book chapters = 12
Number of journal articles = 172
Number of Ph.D. dissertations = 18
Number of Master's theses = 30
Number of reports = 12
Total = 247
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