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Jump to:     Books     Book chapters     Journal articles     Master's theses     Ph.D. dissertations     Reports    

Books       back to the top
Busch, D.E., J.C. Trexler (eds.) 2003. Monitoring Ecosystems: Interdisciplinary Approaches for Evaluating Ecoregional Initiatives. Island Press, Washington, D.C.. 447 pp.

Hollander, G. 2008. Raising Cane in the Glades: The Global Sugar Trade and the Transformation of Florida. The University of Chicago Press, Chicago.

Larsen, Laurel , Joyce Mihran Turley 2012. One Night in the Everglades. Moonlight Publishing, Taylor Trade Publishing, New York. 32 pp.

Ogden, L.A. 2011. Swamplife: People, Gators, and Mangroves Entangled in the Everglades. University of Minnesota Press, Minneapolis, MN. 224 pp.

Simmons, G., L.A. Ogden 2010. Gladesmen: Gator Hunters, Moonshiners, and Skiffers. University of Florida Press, Gainesville, FL.

Book chapters       back to the top
Boyer, J.N., H.O. Briceno. 2012. Water residence time is a significant driver of ecosystem structure and function in estuaries . Pages 119 In Kruczynski, W.L., P.J. Fletcher (eds.) Tropical Connections: South Florida's Marine Environment. IAN Press, University of Maryland Center for Environmental Science, Cambridge, MD.

Brondizio, E., R. Roy Chowdhury. 2010. Spatio-temporal methodologies in Environmental Anthropology: Geographic Information Systems, remote sensing, landscape changes and local knowledge . Pages 266-298 In Vaccaro, I., E.A. Smith, S. Aswani (eds.) Society and Environment: Methods and Research Design. Cambridge University Press.

Cooper, S., E.E. Gaiser, A. Wachnicka. 2010. Estuarine paleoecological reconstructions using diatoms . Pages 324-345 In Smol, J.P., E.F. Stoermer (eds.) The Diatoms: Applications in Environmental and Earth Sciences. Cambridge University Press, New York.

Davis, S.E., D. Lirman, J. Wozniak. 2009. Nitrogen and phosphorus exchange among tropical coastal ecosystems . Pages 9-44 In Nagelkerken, Ivan (ed.) Ecological Connectivity Among Tropical Coastal Ecosystems. Springer, New York.

DeAngelis, D.L., J.C. Trexler, D.D. Donalson. 2010. Competition dynamics in a seasonally varying wetland . Pages 1-14 In Cantrell, S., C. Cosner, S. Ruan (eds.) Spatial Ecology. Chapman Hall/CRC Press, Boca Raton, FL.

Dittmar, T., B. Koch, R. Jaffe. 2009. Tools for studying biogeochemical connectivity among tropical coastal ecosystems . Pages 425-455 In Nagelkerken, Ivan (ed.) Ecological Connectivity among Tropical Coastal Ecosystems. Springer, New York.

Gaiser, E.E.. (In Press). Long-term environmental research . In Willig, M., L. Walker (eds.) Long-Term Environmental Research: Changing the Nature of Scientists. Oxford Press.

Gaiser, E.E., A.D. Gottlieb, S.S. Lee, J.C. Trexler. (In Press). The importance of species-based microbial assessment of water quality in freshwater Everglades wetlands . In Entry, J., K. Jayachandran, A.D. Gottlieb, A. Ogram (eds.) Microbiology of the Everglades Ecosystem. Science Publishers, Boca Raton, Florida.

Gaiser, E.E., J.C. Trexler, P. Wetzel. 2012. The Florida Everglades . Pages 231-252 In Baxter, D., A. Baldwin (eds.) Wetland Habitats of North America: Ecology and Conservation Concerns. University of California Press, Berkeley.

Gaiser, E.E., K. Ruhland. 2010. Diatoms as Indicators of Environmental Change in Wetlands and Peatlands . Pages 473-496 In Smol, J.P., E.F. Stoermer (eds.) The Diatoms: Applications in Environmental and Earth Sciences. Cambridge University Press, Cambridge.

Gann, D., J.H. Richards, S.S. Lee, E.E. Gaiser. (In Press). Detecting and monitoring calcareous periphyton mats in the greater Everglades using passive remote sensing methods . In Entry, J., K. Jayachandran, A.D. Gottlieb, A. Ogram (eds.) Microbiology of the Everglades Ecosystem. Science Publishers, Boca Raton, Florida.

Glibert, P.M., J.N. Boyer, C. Heil, C.J. Madden, B. Sturgis, C.S. Wazniak. 2010. Blooms in lagoons: Different from Those of River-Dominated Estuaries . Pages 98-113 In Kennish, M.J., H.W. Paerl (eds.) Coastal Lagoons: Critical Habitats of Environmental Change. CRC Press, Boca Raton, FL.

Gottlieb, A.D., E.E. Gaiser, S.E. Hagerthey. (In Press). The effects of development, and water management infrastructure and operations on hydrology, nutrient loading, and conductivity in the Florida Everglades, and concurrent changes in periphyton mat community structure and function . In Entry, J., K. Jayachandran, A.D. Gottlieb, A. Ogram (eds.) Microbiology of the Everglades Ecosystem. Science Publishers, Boca Raton, Florida.

Hall, R.O., S.E. Thomas, E.E. Gaiser. 2007. Measuring primary production in freshwater ecosystems . Pages 175-203 In Fahey, T.J., A.K. Knapp (eds.) Principles and Standards for Measuring Net Primary Production in Long-Term Ecological Studies. Oxford University Press.

Heithaus, M.R., A. Frid, J.J. Vaudo, B. Worm, A.J. Wirsing. 2010. Unraveling the ecological importance of elasmobranchs . Pages 611-637 In Heithaus, M.R., J.C. Carrier, J. Musick (eds.) The biology of sharks and their relatives II: Biodiversity, adaptive physiology, and conservation. CRC Press, Boca Raton, FL.

Heithaus, M.R., J.J. Vaudo. 2012. Predator-Prey Interactions . Pages 505-546 In Carrier, J.C., J. Musick, M.R. Heithaus (eds.) Biology of Sharks and Their Relatives, Second Edition. CRC Press, Boca Raton, FL.

Jaffe, R., K. Cawley, Y. Yamashita. 2014. Applications of Excitation Emission Matrix Fluorescence with Parallel Factor Analysis (EEM-PARAFAC) in Assessing Environmental Dynamics of Natural Dissolved Organic Matter (DOM) in Aquatic Environments: A Review . Pages 27-73 In Rosario-Ortiz, F. (ed.) Advances in the Physicochemical Characterization of Dissolved Organic Matter: Impact on Natural and Engineered Systems. American Chemical Society, Washington, DC.

Jopp, F., D.L. DeAngelis, J.C. Trexler. 2011. Chapter 18. Trophic Cascades and Food Web Stability in Fish Communities of the Everglades . Pages 257-268 In Jopp, F., H. Reuter, B. Breckling (eds.) Modelling Complex Ecological Dynamics- An Introduction into Ecological Modeling for Students, Teachers & Scientists. Springer-Verlag, Berlin, Heidelberg.

Knapp, A.K., J.M. Briggs, D.L. Childers. 2007. Estimating aboveground net primary production in grassland and herbaceous dominated systems . Pages 27- 48 In Fahey, T.J., A.K. Knapp (eds.) Principles and Standards for Measuring Net Primary Production in Long-term Ecological Studies. Oxford University Press.

Ogden, L.A., N. Heynen, U. Oslender, P. West, K. Kassam, P. Robbins. (In Review). The Politics of Earth Stewardship in the Uneven Anthropocene . In Rozzi, R., S.T.A. Pickett, J.B. Callicott, F.S. Chapin, M.E. Power, J.J. Armesto (eds.) Earth Stewardship: Linking Ecology and Ethics in Theory and Practice. Springer.

Price, R.M., P.K. Swart. 2006. Geochemical Indicators of Groundwater Recharge in the surficial aquifer system: Everglades National Park, Florida, USA . Pages 251-266 In Harmon, R.S., D. Wicks (eds.) Perspectives on karst geomorphology, hydrology, and geochemistry -A Tribute volume to Derek C. Ford and William B. White: GSA Special Paper 404.

Rivera-Monroy, V.H., E. Castañeda-Moya, J.G. Barr, V. Engel, J.D. Fuentes, T. Troxler, R.R. Twilley, S. Bouillon, T.J. Smith, T.L. O'Halloran. 2013. Current Methods to Evaluate Net Primary Production and Carbon Budgets in Mangrove Forests . Pages 243-288 In Delaune, R.D., K.R. Reddy, P. Megonigal, C. Richardson (eds.) Methods in Biogeochemistry of Wetlands. Soil Science Society of America Book Series.

Rivera-Monroy, V.H., R.D. Delaune, A.B. Owens, J. Visser, J.R. White, R.R. Twilley, H. Hernandez-Trejo, J.A. Benitez. 2011. Removal of Physical Materials from Systems: Loss of Space, Area, and Habitats . Pages 185-215 In Wolanski, E., D.S. McLusky (eds.) Treatise on Estuarine and Coastal Science, Volume 8. Waltham: Academic Press.

Rudnick, D.T., S.P. Kelly, C.J. Madden, K.M. Cunniff, J.N. Boyer, S. Blair. 2012. An unprecedented phytoplankton bloom occurred in eastern Florida Bay from 2005-2008 . Pages 126-128 In Kruczynski, W.L., P.J. Fletcher (eds.) Tropical Connections: South Florida's Marine Environment. IAN Press, University of Maryland Center for Environmental Science, Cambridge, MD.

Trexler, J.C., D.E. Busch. 2003. Monitoring, assessment, and ecoregional initiatives: a synthesis . Pages 405-424 In Busch, D.E., J.C. Trexler (eds.) Monitoring Ecosystems: Interdisciplinary Approaches for Evaluating Ecoregional Initiatives. Island Press, Washington, D.C..

Trexler, J.C., D.L. DeAngelis. 2010. Modeling the evolution of complex reproductive adaptations in poeciliid fishes: Matrotrophy and superfetation . Pages 231-240 In Uribe, M.C., H.J. Greer (eds.) Viviparous Fishes II. New Life Publications, Homestead, FL.

Trexler, J.C., D.L. DeAngelis, J. Jiang. 2011. Community assembly and mode of reproduction: predicting the distribution of livebearing fishes . In Evans, J., A. Pilastro, I. Schlupp (eds.) Ecology and Evolution of Poeciliid Fishes. University of Chicago Press, Chicago, IL.

Trexler, J.C., E.E. Gaiser, J. Kominoski. (In Press). Edibility and periphyton food webs, specific indicators . In Entry, J., K. Jayachandran, A.D. Gottlieb, A. Ogram (eds.) Microbiology of the Everglades Ecosystem. Science Publishers, Boca Raton, Florida.

Trexler, J.C., W.F. Loftus, J. Chick. 2003. Setting and monitoring restoration goals in the absence of historical data: The case of fishes in the Florida Everglades . Pages 351-376 In Busch, D.E., J.C. Trexler (eds.) Monitoring Ecosystems: Interdisciplinary Approaches for Evaluating Ecoregional Initiatives. Island Press, Washington, D.C..

Twilley, R.R., V.H. Rivera-Monroy. 2009. Ecogeomorphic Models of Nutrient Biogeochemistry for Mangrove Wetlands . Pages 641-675 In Perillo, G.M.E., E. Wolanski, D.R. Cahoon, M.M. Brinson (eds.) Coastal Wetlands: An Integrated Ecosystem Approach. Elsevier, New York, NY.

Journal articles       back to the top
Abbey-Lee, R., E.E. Gaiser, J.C. Trexler. 2013. Relative roles of dispersal dynamics and competition in determining the isotopic niche breadth of a wetland fish. Freshwater Biology 58: 780-792. DOI: 10.1111/fwb.12084
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Aldwaik, S., R.G. PontiusJr., J. Onsted. (In Review). Sequential Land Category Aggregations to Maintain Maximum Change Over Time. Land

Amiro, B.D., A.G. Barr, J.G. Barr, T.A. Black, R. Bracho, M. Brown, J. Chen, K.L. Clark, K.J. Davis, A.R. Desai, S. Dore, V. Engel, J.D. Fuentes, A.H. Goldstein, M. Goulden, T.E. Kolb, M.B. Lavigne, B.E. Law, H.A. Margolis, T. Martin, J.H. McCaughey, L. Misson, M. Montes-Helu, A. Noormets, J.T. Randerson, G. Starr, J. Xiao. 2010. Ecosystem carbon dioxide fluxes after disturbance in forests of North America. Journal of Geophysical Research 115: G00J02, 13 pp.. DOI: 10.1029/2010JG001390
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Anderson, W., E.E. Gaiser. 2013. Paleoenvironmental change in wetlands of the Florida Everglades, southeast USA. Journal of Paleolimnology 49(1): 1-3. DOI: 10.1007/s10933-012-9665-7
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Anderson, W.T., J.W. Fourqurean. 2003. Intra- and interannual variability in seagrass carbon and nitrogen stable isotopes from south Florida, a preliminary study. Organic Geochemistry 34(2): 185-194. DOI: 10.1016/S0146-6380(02)00161-4
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Anderson, W.T., L.S.L. Sternberg, M.C. Pinzon, T. Troxler-Gann, D.L. Childers, M. Duever. 2005. Carbon isotopic composition of cypress trees from South Florida and changing hydrologic condition. Dendrochronologia 23(1): 1-10.
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Apodaca, J.J., J.C. Trexler, N. Jue, M. Schrader, J. Travis. 2013. Large-scale natural disturbance alters genetic population structure of the sailfin molly, Poecilia latipinna. The American Naturalist 181: 254-263. DOI: 10.1086/668831
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Armentano, T.V., J.P. Sah, M.S. Ross, D.T. Jones, H.C. Cooley, C.S. Smith. 2006. Rapid responses of vegetation to hydrological changes in Taylor Slough, Everglades National Park, Florida, USA. Hydrobiologia 569(1): 293-309. DOI: 10.1007/s10750-006-0138-8
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Armitage, A.R., J.W. Fourqurean. 2009. Stable isotopes reveal complex changes in trophic relationships following nutrient addition in a coastal marine ecosystem. Estuaries and Coasts 32: 1152-1164. DOI: 10.1007/s12237-009-9219-z
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Armitage, A.R., T.A. Frankovich, J.W. Fourqurean. 2006. Variable responses within epiphytic and benthic microalgal communities to nutrient enrichment. Hydrobiologia 569(1): 423-435. DOI: 10.1007/s10750-006-0146-8
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Armitage, A.R., T.A. Frankovich, J.W. Fourqurean. 2011. Long-Term Effects of Adding Nutrients to an Oligotrophic Coastal Environment . Ecosystems 14(3): 430-444. DOI: 10.1007/s10021-011-9421-2
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Armitage, A.R., T.A. Frankovich, K.L. HeckJr., J.W. Fourqurean. 2005. Experimental nutrient enrichment causes complex changes in seagrass, microalgae, and macroalgae community structure in Florida Bay. Estuaries 28(3): 422-434.
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Baber, M.J., D.L. Childers, K.J. Babbitt, D.H. Anderson. 2002. Controls on fish distribution and abundance in temporary wetlands. Canadian Journal of Fisheries and Aquatic Sciences 59(9): 1441-1450.
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Baggett, L.P., K.L. HeckJr., T.A. Frankovich, A.R. Armitage, J.W. Fourqurean. 2010. Nutrient enrichment, grazer identity and their effects on epiphytic algal assemblages: field experiments in sub-tropical turtlegrass (Thalassia testudinum) meadows. Marine Ecology Progress Series 406: 33-45. DOI: 10.3354/meps08533
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Baggett, L.P., K.L. HeckJr., T.A. Frankovich, A.R. Armitage, J.W. Fourqurean. 2013. Stoichiometry, growth, and fecundity responses to nutrient enrichment by invertebrate grazers in sub-tropical turtlegrass (Thalassia testudinum) meadows. Marine Biology 160(1): 169-180. DOI: 10.1007/s00227-012-2075-6

Balcarczyk, K.L., J.B. Jones Jr., R. Jaffe, N. Maie. 2009. Stream dissolved organic matter bioavailability and composition in watersheds underlain with discontinuous permafrost. Biogeochemistry 94: 255-270. DOI: 10.1007/s10533-009-9324-x

Banet, A.I., J.C. Trexler. 2013. Space-for-Time Substitution Works in Everglades Ecological Forecasting Models. PLoS ONE 8(11): e81025. DOI: 10.1371/journal.pone.0081025
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Barr, J.G., J.D. Fuentes, M.S. DeLonge, T.L. O'Halloran, D. Barr, J.C. Zieman. 2013. Summertime influences of tidal energy advection on the surface energy balance in a mangrove forest. Biogeosciences 10: 501-511. DOI: 10.5194/bgd-10-501-2013

Barr, J.G., J.D. Fuentes, N. Wang, Y. Edmonds, J.C. Zieman, B.P. Hayden, D.L. Childers. 2003. Red mangroves emit hydrocarbons. Southeastern Naturalist 2(4): 499-510.

Barr, J.G., J.D. Fuentes, T.L. O'Halloran, D. Barr, J.C. Zieman. 2006. Carbon assimilation by mangrove forests in the Florida Everglades. Amalgam 1: 27-37.
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Barr, J.G., J.D. Fuentes, V. Engel, J.C. Zieman. 2009. Physiological responses of red mangroves to the climate in the Florida Everglades. Journal of Geophysical Research 114: G02008. DOI: 10.1029/2008JG000843
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Barr, J.G., M.S. DeLonge, J.D. Fuentes. 2014. Seasonal evapotranspiration patterns in mangrove forests. Journal of Geophysical Research: Atmospheres 119(7): 3886-3899. DOI: 10.1002/2013JD021083

Barr, J.G., T. Troxler, R.G. Najjar. 2014. Understanding Coastal Carbon Cycling by Linking Top-Down and Bottom-Up Approaches. Eos, Transactions, American Geophysical Union 95: 315. DOI: 10.1002/2014EO350004

Barr, J.G., V. Engel, J.D. Fuentes, D. Fuller, H.-H. Kwon. 2013. Modeling light use efficiency in a subtropical mangrove forest equipped with CO2 eddy covariance. Biogeosciences 10: 2145-2158. DOI: 10.5194/bg-10-2145-2013
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Barr, J.G., V. Engel, J.D. Fuentes, J.C. Zieman, T.L. O'Halloran, T.J. Smith, G. Anderson. 2010. Controls on mangrove forest-atmosphere carbon dioxide exchanges in western Everglades National Park. Journal of Geophysical Research 115: G02020. DOI: 10.1029/2009JG001186
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Barr, J.G., V. Engel, T.J. Smith, J.D. Fuentes. 2012. Hurricane disturbance and recovery of energy balance, CO2 fluxes and canopy structure in a mangrove forest of the Florida Everglades. Agricultural and Forest Meteorology 153: 54-66. DOI: 10.1016/j.agrformet.2011.07.022
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Bazante, J., G. Jacobi, H. Solo-Gabriele, D.R. Reed, S. Mitchell-Bruker, D.L. Childers, L. Leonard, M.S. Ross. 2006. Hydrologic measurements and implications for tree island formation within Everglades National Park. Journal of Hydrology 329(3-4): 606-619. DOI: 10.1016/j.jhydrol.2006.03.011
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Beck, M.W., K.L. HeckJr., K.W. Able, D.L. Childers, D.B. Eggleston, B.M. Gillanders, B.S. Halpern, C.G. Hays, K. Hoshino, T.J. Minello, R.J. Orth, P.F. Sheridan, M.P. Weinstein. 2003. The role of nearshore ecosystems as fish and shellfish nurseries. Issues in Ecology 11: 1-12.

Belicka, L., D. Burkholder, J.W. Fourqurean, M.R. Heithaus, S.A. Macko, R. Jaffe. 2012. Stable isotope and fatty acid biomarkers of seagrass, epiphytic, and algal organic matter to consumers in a nearly pristine seagrass ecosystem . Marine and Freshwater Research 63: 1085-1097. DOI: 10.1071/MF12027
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Belicka, L., E.R. Sokol, J.M. Hoch, R. Jaffe, J.C. Trexler. 2012. A molecular and stable isotopic approach to investigate the importance of algal and detrital energy pathways in a freshwater marsh. Wetlands 32(3): 531-542. DOI: 10.1007/s13157-012-0288-6
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Belicka, L., P. Matich, R. Jaffe, M.R. Heithaus. 2012. Fatty acids and stable isotopes as indicators of early-life feeding and maternal resource dependency in the bull shark Carcharhinus leucas. Marine Ecology Progress Series 455: 245-256.
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Blanco, R.I., G.M. Naja, R. Rivero, R.M. Price. 2013. Spatial and temporal changes in groundwater salinity in South Florida. Applied Geochemistry 38: 48-58. DOI: 10.1016/j.apgeochem.2013.08.008
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Blum, M.J., J.S. McLachlan, C.J. Saunders, R. Hamilton, J.D. Herrick. (In Review). Genetic variation within Schoenoplectus americanus (Cyperaceae) across multiple spatial scales. Molecular Ecology

Borum, J., O. Pedersen, T. Greve, T.A. Frankovich, J.C. Zieman, J.W. Fourqurean, C.J. Madden. 2005. The potential role of plant oxygen and sulphide dynamics in die-off events of the tropical seagrass, Thalassia testudinum. Journal of Ecology 93(1): 148-158. DOI: 10.1111/j.1365-2745.2004.00943.x
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Boucek, R., J.S. Rehage. 2013. No free lunch: displaced marsh consumers regulate a prey subsidy to an estuarine consumer. Oikos Early View: DOI: 10.1111/j.1600-0706.2013.20994.x.
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Boucek, R., J.S. Rehage. 2013. A Tale of Two Fishes: Using Recreational Angler Records to Examine the Link Between Fish Catches and Floodplain Connections in a Subtropical Coastal River. Estuaries and Coasts DOI: 10.1007/s12237-013-9710-4
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Boucek, R., J.S. Rehage. 2014. Climate extremes drive changes in functional community structure. Global Change Biology 20(6): 1821-1831. DOI: 10.1111/gcb.12574
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Boucek, R., J.S. Rehage. 2014. Examining the Effectiveness of Consumer Diet Sampling as a Nonnative Detection Tool in a Subtropical Estuary. Transactions of the American Fisheries Society 143(2): 489-494. DOI: 10.1080/00028487.2013.862180
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Bouillon, S., A.V. Borges, E. Castañeda, K. Diele, T. Dittmar, N.C. Duke, E. Kristensen, S.Y. Lee, C. Marchand, J.J. Middelburg, V.H. Rivera-Monroy, R.R. Twilley, T.J. Smith. 2008. Mangrove production and carbon sinks: A revision of global budget estimates. Global Biogeochemical Cycles 22: GB2013.
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Boyer, J.N.. 2006. Shifting N and P limitation along a north-south gradient of mangrove estuaries in South Florida. Hydrobiologia 569(1): 167-177. DOI: 10.1007/s10750-006-0130-3
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Boyer, J.N., C.R. Kelble, P.B. Ortner, D.T. Rudnick. 2009. Phytoplankton bloom status: Chlorophyll a biomass as an indicator of water quality condition in the southern estuaries of Florida, USA . Ecological Indicators 9(6): S56-S67 . DOI: 10.1016/j.ecolind.2008.11.013
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Boyer, J.N., S.K. Dailey, P.J. Gibson, M.T. Rogers, D. Mir-Gonzalez. 2006. The role of dissolved organic matter bioavailability in promoting phytoplankton blooms in Florida Bay. Hydrobiologia 569(1): 71-85. DOI: 10.1007/s10750-006-0123-2
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Bramburger, A., J. Munyon, E.E. Gaiser. 2013. Water Quality and Wet Season Diatom Assemblage Characteristics from the Tamiami Trail Pilot Swales Sites (Everglades National Park, Florida, USA). Phytotaxa 127: 163-182. DOI: 10.11646/phytotaxa.127.1.16
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Breithaupt, J.L., J.M. Smoak, T.J. Smith, C.J. Sanders, A. Hoare. 2012. Organic carbon burial rates in mangrove sediments: Strengthening the global budget. Global Biogeochemical Cycles 26: GB3011, 11 pp.. DOI: 10.1029/2012GB004375
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Briceno, H.O., G. Miller, S.E. Davis. 2014. Relating freshwater flow with estuarine water quality in the southern Everglades mangrove ecotone. Wetlands 34(Suppl 1): 101-111. DOI: 10.1007/s13157-013-0430-0

Briceno, H.O., J.N. Boyer. 2010. Climatic Controls on Phytoplankton Biomass in a Sub-tropical Estuary, Florida Bay, USA. Estuaries and Coasts 33(2): 541-553. DOI: 10.1007/s12237-009-9189-1
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Briceno, H.O., J.N. Boyer, J. Castro, P. Harlem. 2013. Biogeochemical Classification of South Florida's Estuarine and Coastal Waters. Marine Pollution Bulletin 75: 187-204. DOI: 10.1016/j.marpolbul.2013.07.034
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Brody, S.D., S.E. Davis, W.E. Highfield, S.P. Bernhardt. 2008. A Spatial-Temporal Analysis of Section 404 Wetland Permitting in Texas and Florida: Thirteen Years of Impact Along the Coast. Wetlands 28(1): 107-116. DOI: 10.1672/07-90.1

Browder, J.A., M.B. Robblee. 2009. Pink shrimp as an indicator for restoration of everglades ecosystems. Ecological Indicators 9(6): S17-S28. DOI: 10.1016/j.ecolind.2008.10.007

Burkholder, D., M.R. Heithaus, J.W. Fourqurean. 2012. Feeding preferences of herbivores in a relatively pristine subtropical seagrass ecosystem. Marine and Freshwater Research 63: 1051-1058. DOI: 10.1071/MF12029
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Calderon-Aguilera, L.E., V.H. Rivera-Monroy, L. Porter-Bolland, A. Martinez-Yrizar, L. Ladah, M. Martinez-Ramos, J. Alcocer, A.L. Santiago-Perez, H.A. Hernandez-Arana, V.M. Reyes-Gomez, D.R. Perez-Salicrup, V. Diaz-Nunez, J. Sosa-Ramirez, J. Herrera-Silveira, A. Burquez. 2012. An assessment of natural and human disturbance effects on Mexican ecosystems: current trends and research gaps. Biodiversity and Conservation 21(3): 589-617. DOI: 10.1007/s10531-011-0218-6

Campbell, J.E., J.W. Fourqurean. 2009. Interspecific variation in the elemental and stable isotopic content of seagrasses in South Florida. Marine Ecology Progress Series 387: 109-123. DOI: 10.3354/meps08093
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Campbell, J.E., J.W. Fourqurean. 2011. Novel methodology for in situ carbon dioxide enrichment of benthic ecosystems. Limnology and Oceanography Methods 9: 97-109. DOI: 10.4319/lom.2011.9.97
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Campbell, J.E., J.W. Fourqurean. 2013. Effects of in situ CO2 enrichment on the structural and chemical characteristics of the seagrass Thalassia testudinum . Marine Biology 160(6): 1465-1475. DOI: 10.1007/s00227-013-2199-3
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Campbell, J.E., J.W. Fourqurean. 2013. Mechanisms of bicarbonate use influence photosynthetic CO2 sensitivity of tropical seagrasses. Limnology and Oceanography 58: 839-848. DOI: 10.4319/lo.2013.58.3.0839
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Campbell, J.E., J.W. Fourqurean. 2014. Ocean acidification outweighs nutrient effects in structuring seagrass epiphyte communities. Journal of Ecology 102(3): 730-737. DOI: 10.1111/1365-2745.12233
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Campbell, J.E., L.A. Yarbro, J.W. Fourqurean. 2012. Negative relationships between the nutrient and carbohydrate content of the seagrass Thalassia testudinum. Aquatic Botany 99: 56-60. DOI: 10.1016/j.aquabot.2012.02.002
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Cardona-Olarte, P., K.W. Krauss, R.R. Twilley. 2013. Leaf Gas Exchange and Nutrient Use Efficiency Help Explain the Distribution of Two Neotropical Mangroves under Contrasting Flooding and Salinity. International Journal of Forestry Research 2013: 524625. DOI: 10.1155/2013/524625
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Cardona-Olarte, P., R.R. Twilley, K.W. Krauss, V.H. Rivera-Monroy. 2006. Responses of neotropical mangrove seedlings grown in monoculture and mixed culture under treatments of hydroperiod and salinity. Hydrobiologia 569(1): 325-341. DOI: 10.1007/s10750-006-0140-1
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Castañeda-Moya, E., R.R. Twilley, V.H. Rivera-Monroy. 2013. Allocation of biomass and net primary productivity of mangrove forests along environmental gradients in the Florida Coastal Everglades, USA. Forest Ecology and Management 307: 226-241. DOI: 10.1016/j.foreco.2013.07.011
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Castañeda-Moya, E., R.R. Twilley, V.H. Rivera-Monroy, B.D. Marx, C. Coronado-Molina, S.M.L. Ewe. 2011. Patterns of root dynamics in mangrove forests along environmental gradients in the Florida Coastal Everglades, USA. Ecosystems 14(7): 1178-1195. DOI: 10.1007/s10021-011-9473-3
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Castañeda-Moya, E., R.R. Twilley, V.H. Rivera-Monroy, K. Zhang, S.E. Davis, M.S. Ross. 2010. Sediment and Nutrient Deposition Associated with Hurricane Wilma in Mangroves of the Florida Coastal Everglades. Estuaries and Coasts 33(1): 45-58. DOI: 10.1007/s12237-009-9242-0
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Cawley, K., P. Wolski, N. Mladenov, R. Jaffe. 2012. Dissolved organic matter biogeochemistry along a transect of the Okavango Delta, Botswana. Wetlands 32: 475-486. DOI: 10.1007/s13157-012-0281-0
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Cawley, K., Y. Ding, J.W. Fourqurean, R. Jaffe. 2012. Characterising the sources and fate of dissolved organic matter in Shark Bay, Australia: a preliminary study using optical properties and stable carbon isotopes. Marine and Freshwater Research 63: 1098-1107. DOI: 10.1071/MF12028
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Cawley, K., Y. Yamashita, N. Maie, R. Jaffe. 2014. Using Optical Properties to Quantify Fringe Mangrove Inputs to the Dissolved Organic Matter (DOM) Pool in a Subtropical Estuary. Estuaries and Coasts 37(2): 399-410. DOI: 10.1007/s12237-013-9681-5
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Chambers, L.G., S.E. Davis, T. Troxler, A. Downey-Wall, J.N. Boyer, L.J. Scinto. 2014. Biogeochemical effects of simulated sea level rise on carbon loss in an Everglades mangrove peat soil. Hydrobiologia 726: 195-211. DOI: 10.1007/s10750-013-1764-6

Chambers, R.M., J.W. Fourqurean, S.A. Macko, R. Hoppenot. 2001. Biogeochemical effects of iron availability on primary producers in a shallow marine carbonate environment. Limnology and Oceanography 46(6): 1278-1286.

Chambers, R.M., K.A. Pederson. 2006. Variation in soil phosphorus, sulfur, and iron pools among south Florida wetlands. Hydrobiologia 569(1): 63-70. DOI: 10.1007/s10750-006-0122-3

Chambers, R.M., R.L. Hatch, T. Russell. 2014. Effect of water management on interannual variation in bulk soil properties from the eastern coastal Everglades. Wetlands 34 (Suppl 1): 47-54. DOI: 10.1007/s13157-013-0393-1

Chen, M., N. Maie, K. Parish, R. Jaffe. 2013. Spatial and temporal variability of dissolved organic matter quantity and composition in an oilgotrophic subtropical coastal wetland. Biogeochemistry DOI: 10.1007/s10533-013-9826-4
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Chen, M., R. Jaffe. 2014. Photo- and bio-reactivity patterns of dissolved organic matter from biomass and soil leachates and surface waters in a subtropical wetland. Water Research 61: 181-190. DOI: 10.1016/j.watres.2014.03.075
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Chen, M., R.M. Price, Y. Yamashita, R. Jaffe. 2010. Comparative study of dissolved organic matter from groundwater and surface water in the Florida coastal Everglades using multi-dimensional spectrofluorometry combined with multivariate statistics. Applied Geochemistry 25(6): 872-880. DOI: 10.1016/j.apgeochem.2010.03.005
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Chick, J., J.C. Trexler. 2004. Spatial scale and abundance patterns of large fish communities in freshwater marshes of the Florida Everglades. Wetlands 24(3): 652-664.
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Childers, D.L.. 2006. A synthesis of long-term research by the Florida Coastal Everglades LTER program. Hydrobiologia 569(1): 531-544. DOI: 10.1007/s10750-006-0154-8
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Childers, D.L., D. Iwaniec, D. Rondeau, G.A. Rubio, E. Verdon, C.J. Madden. 2006. Responses of sawgrass and spikerush to variation in hydrologic drivers and salinity in southern Everglades marshes. Hydrobiologia 569(1): 273-292. DOI: 10.1007/s10750-006-0137-9
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Childers, D.L., J. Corman, M. Edwards, J.J. Elser. 2011. Sustainability Challenges of Phosphorus and Food: Solutions from Closing the Human Phosphorus Cycle. BioScience 61: 117-124. DOI: 10.1525/bio.2011.61.2.6
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Childers, D.L., J.N. Boyer, S.E. Davis, C.J. Madden, D.T. Rudnick, F.H. Sklar. 2006. Relating precipitation and water management to nutrient concentration patterns in the oligotrophic "upside down" estuaries of the Florida Everglades. Limnology and Oceanography 51(1): 602-616. DOI: 10.4319/lo.2006.51.1_part_2.0602
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Childers, D.L., R.F. Doren, G.B. Noe, M. Rugge, L.J. Scinto. 2003. Decadal change in vegetation and soil phosphorus patterns across the Everglades landscape. Journal of Environmental Quality 32: 344-362.
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Chin, D.A., R.M. Price, V.J. DiFrenna. 2009. Nonlinear Flow in Karst Formations. Ground Water 47(5): 669-674. DOI: 10.1111/j.1745-6584.2009.00574.x
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Christiaen, B., R. Bernard, B. Mortazavi, J. Cebrian, A.C. Ortmann. 2014. The degree of urbanization across the globe is not reflected in the delta N-15 of seagrass leaves. Marine Pollution Bulletin 83(2): 440-445. DOI: 10.1016/j.marpolbul.2013.06.024
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Clement, B., J. Javier, J.P. Sah, M.S. Ross. 2011. The effects of wildfires on the magnetic properties of soils in the Everglades. Earth Surface Processes and Landforms 36(4): 460-466. DOI: 10.1002/esp.2060
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Collado-Vides, L., L.M. Rutten, J.W. Fourqurean. 2005. Spatiotemporal variation of the abundance of calcareous green macroalgae in the Florida Keys: A study of synchrony within a macroalgal functional-form group. Journal of Phycology 41: 742-752. DOI: 10.1111/j.1529-8817.2005.00099.x

Collado-Vides, L., V. Mazzei, T. Thyberg, D. Lirman. 2011. Spatio-temporal patterns and nutrient status of macroalgae in a heavily managed region of Biscayne Bay, Florida, USA. Botanica Marina 54: 377-390. DOI: 10.1515/BOT.2011.046
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Collado-Vides, L., V.G. Caccia, J.N. Boyer, J.W. Fourqurean. 2007. Tropical seagrass-associated macroalgae distributions and trends relative to water quality. Estuarine Coastal and Shelf Science 73: 680-694. DOI: 10.1016/j.ecss.2007.03.009
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Collins, S.L., S.R. Carpenter, S.M. Swinton, D.E. Orenstein, D.L. Childers, T.L. Gragson, N.B. Grimm, J.M. Grove, S.L. Harlan, J.P. Kaye, A.K. Knapp, G.P. Kofinas, J.J. Magnuson, W.H. McDowell, J.M. Melack, L.A. Ogden, G.P. Robertson, M.D. Smith, A.C. Whitmer. 2010. An integrated conceptual framework for long-term social-ecological research. Frontiers in Ecology and the Environment 9: 351-357. DOI: 10.1890/100068

Daoust, R.J., D.L. Childers. 2004. Ecological effects of low-level phosphorus additions on two plant communities in a neotropical freshwater wetland ecosystem. Oecologia 141(4): 672-686. DOI: 10.1007/s00442-004-1675-3

Davis, S.E., C. Coronado-Molina, D.L. Childers, J.W. Day. 2003. Temporally dependent C, N, and P dynamics associated with the decay of Rhizophora mangle L. leaf litter in oligotrophic mangrove wetlands of the Southern Everglades. Aquatic Botany 75(3): 199-215. DOI: 10.1016/S0304-3770(02)00176-6

Davis, S.E., D.L. Childers. 2007. Importance of water source in controlling leaf leaching losses in a dwarf red mangrove (Rhizophora mangle L.) wetland. Estuarine, Coastal and Shelf Science 71(1-2): 194-201. DOI: 10.1016/j.ecss.2006.07.010
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Davis, S.E., D.L. Childers, G.B. Noe. 2006. The contribution of leaching to the rapid release of nutrients and carbon in the early decay of wetland vegetation. Hydrobiologia 569(1): 87-97. DOI: 10.1007/s10750-006-0124-1
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Davis, S.E., D.L. Childers, J.W. Day, D.T. Rudnick, F.H. Sklar. 2003. Factors affecting the concentration and flux of materials in two southern Everglades mangrove wetlands. Marine Ecology Progress Series 253: 85-96.
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Davis, S.E., J.E. Cable, D.L. Childers, C. Coronado-Molina, J.W. Day, C.D. Hittle, C.J. Madden, D. Rudnick, E. Reyes, F. Sklar. 2004. Importance of Episodic Storm Events in Controlling Ecosystem Structure and Function in a Gulf Coast Estuary. Journal of Coastal Research 20(4): 1198-1208.

Davis, S.M., D.L. Childers, J. Lorenz, T.E. Hopkins. 2005. A conceptual model of ecological interactions in the mangrove estuaries of the Florida Everglades. Wetlands 25(4): 832-842. DOI: 10.1672/0277-5212(2005)025[0832:ACMOEI]2.0.CO;2
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DeAngelis, D.L., J.C. Trexler, C. Cosner, A. Obaza, F. Jopp. 2010. Fish population dynamics in a seasonally varying wetland. Ecological Modelling 221(8): 1131-1137. DOI: 10.1016/j.ecolmodel.2009.12.021
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DeAngelis, D.L., J.C. Trexler, W.F. Loftus. 2005. Life history trade-offs and community dynamics of small fishes in a seasonally pulsed wetland. Canadian Journal of Fisheries and Aquatic Sciences 62(4): 781-790.

Deng, Y., H. Solo-Gabriele, M. Laas, L. Leonard, D.L. Childers, G. He, V. Engel. 2010. Impacts of hurricanes on surface water flow within a wetland. Journal of Hydrology 392(3-4): 164-173. DOI: 10.1016/j.jhydrol.2010.08.004
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Dewsbury, B.M., J.W. Fourqurean. 2010. Artificial reefs concentrate nutrients and alter benthic community structure in an oligotrophic, subtropical estuary. Bulletin of Marine Science 86(4): 813-828.
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DiFrenna, V.J., R.M. Price, M.R. Savabi. 2008. Identification of a hydrodynamic threshold in karst rocks from the Biscayne Aquifer, south Florida, USA. Hydrogeology Journal 16(1): 31-42. DOI: 10.1007/s10040-007-0219-4
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Ding, Y., A. Watanabe, R. Jaffe. 2014. Dissolved black nitrogen (DBN) in freshwater environments. Organic Geochemistry 68: 1-4. DOI: 10.1016/j.orggeochem.2013.12.009
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Ding, Y., K. Cawley, C.N. da Cunha, R. Jaffe. 2014. Environmental dynamics of dissolved black carbon in wetlands. Biogeochemistry 119(1-3): 259-273. DOI: 10.1007/s10533-014-9964-3
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Ding, Y., Y. Yamashita, W. Dodds, R. Jaffe. 2013. Dissolved black carbon in grassland streams: Is there an effect of recent fire history? Chemosphere 90: 2557-2562. DOI: 10.1016/j.chemosphere.2012.10.098
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Dodds, W., C. Robinson, E.E. Gaiser, G. Hansen, H. Powell, J. Smith, N. Morse, S. Gregory, T. Bell, T. Kratz, W.H. McDowell. 2012. Surprises and Insights from Long-Term Aquatic Datasets and Experiments. BioScience 62: 709-721.

Doren, R.F.. 2009. Editorial. Ecological Indicators 9(6): S1. DOI: 10.1016/j.ecolind.2009.03.009

Doren, R.F., J.C. Trexler, A.D. Gottlieb, M. Harwell. 2009. Ecological Indicators for System-wide Assessment of the Greater Everglades Ecosystem Restoration Program. Ecological Indicators 9(6): S2-S16. DOI: 10.1016/j.ecolind.2008.08.009
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Doren, R.F., J.C. Volin, J.H. Richards. 2009. Invasive exotic plant indicators for ecosystem restoration: An example from the Everglades restoration program. Ecological Indicators 9(6): S29-S36. DOI: 10.1016/j.ecolind.2008.08.006
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Doren, R.F., Jennifer H. Richards, J.C. Volin. 2009. A conceptual ecological model to facilitate understanding the role of invasive species in large-scale ecosystem restoration. Ecological Indicators 9(6): S150-S160. DOI: 10.1016/j.ecolind.2008.06.007

Dorn, N.J., J.C. Trexler. 2007. Crayfish assemblage shifts in a large drought-prone wetland: the roles of hydrology and competition. Freshwater Biology 20(1): 113-115. DOI: 10.1111/j.1365-2427.2007.01860.x
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Dorn, N.J., J.C. Trexler, E.E. Gaiser. 2006. Exploring the role of large predators in marsh food webs: evidence for a behaviorally-mediated trophic cascade. Hydrobiologia 569(1): 375-386. DOI: 10.1007/s10750-006-0143-y
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Dunlop-Hayden, K.L., J.S. Rehage. 2011. Antipredator behavior and cue recognition by multiple Everglades prey to a novel cichlid predator. Behaviour 148: 795-823. DOI: 10.1163/000579511X577256
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Espinar, J.L., M.S. Ross, J.P. Sah. 2011. Pattern of nutrient availability and plant community assemblage in Everglades Tree Islands, Florida, USA. Hydrobiologia 667(1): 89-99. DOI: 10.1007/s10750-011-0641-4
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Evans, S.L., W.T. Anderson, F.J. Jochem. 2006. Spatial variability in Florida Bay particulate organic matter composition: combining flow cytometry with stable isotope analyses. Hydrobiologia 569(1): 151-165. DOI: 10.1007/s10750-006-0129-9
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Ewe, S.M.L., C.E. Lovelock, I.C. Feller, O.E. Moeri, W. Lee, M.C. Ball. (In Review). Growth and allocation responses of three mangrove species grown with different nutrients and salinities. Ecology

Ewe, S.M.L., E.E. Gaiser, D.L. Childers, D. Iwaniec, V.H. Rivera-Monroy, R.R. Twilley. 2006. Spatial and temporal patterns of aboveground net primary productivity (ANPP) along two freshwater-estuarine transects in the Florida Coastal Everglades . Hydrobiologia 569(1): 459-474. DOI: 10.1007/s10750-006-0149-5
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Ewe, S.M.L., L.d.S.L. Sternberg. 2005. Growth and gas exchange patterns of the invasive exotic Schinus terebinthifolius contrasted with native species under controlled saline conditions. Trees 19(2): 119-128. DOI: 10.1007/s00468-004-0370-7

Ewe, S.M.L., L.d.S.L. Sternberg. 2007. Water Uptake Patterns of an Invasive Exotic Plant in Coastal Saline Habitats. Journal of Coastal Research 23(1): 255-264. DOI: 10.2112/1551-5036(2007)23[255:WUPOAI]2.0.CO;2

Ewe, S.M.L., L.d.S.L. Sternberg. (In Review). Seasonal gas exchange of the invasive exotic, Schinus terebinthifolius versus native plant species in mangroves and pinelands of Florida. Plant Ecology

Ewe, S.M.L., L.d.S.L. Sternberg, D.L. Childers. 2007. Seasonal plant water uptake patterns in the saline southeast Everglades ecotone. Oecologia 152(4): 607-616. DOI: 10.1007/s00442-007-0699-x
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Farber, S., R. Costanza, D.L. Childers, J. Erickson, K. Gross, J.M. Grove, C. Hopkinson, J. Kahn, S. Pincetl, A. Troy, P. Warren, M. Wilson. 2006. Linking Ecology and Economics for Ecosystem Management. Bioscience 56(2): 117-129.

Farfan, L., E. D'Sa, K. Liu, V.H. Rivera-Monroy. 2014. Tropical Cyclone Impacts on Coastal Regions: the Case of the Yucatan and the Baja California Peninsulas, Mexico. Estuaries and Coasts 37(6): 1388-1402. DOI: 10.1007/s12237-014-9797-2
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Feliciano, E.A., S. Wdowinski, M. Potts. 2014. Assessing Mangrove Above-Ground Biomass and Structure using Terrestrial Laser Scanning: A Case Study in the Everglades National Park. Wetlands DOI: 10.1007/s13157-014-0558-6
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Fell, J.W., A. Statzell-Tallman, G. Scorzetti, M.H. Gutierrez. 2011. Five new species of yeasts from fresh water and marine habitats in the Florida Everglades. Antonie van Leeuwenhoek 99(3): 533-549. DOI: 10.1007/s10482-010-9521-6

Ferdie, M., J.W. Fourqurean. 2004. Responses of seagrass communities to fertilization along a gradient of relative availability of nitrogen and phosphorus in a carbonate environment. Limnology and Oceanography 49: 2082-2094.
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Ferretti, F., B. Worm, G.L. Britten, M.R. Heithaus, H.K. Lotze. 2010. Patterns and ecosystem consequences of shark declines in the ocean. Ecology Letters 13(8): 1055-1071. DOI: 10.1111/j.1461-0248.2010.01489.x
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Fitz, H.C., G.A. Kiker, J.B. Kim. 2011. Integrated ecological modeling and decision analysis within the Everglades landscape. Critical Reviews in Environmental Science and Technology 41(S1): 517-547. DOI: 10.1080/10643389.2010.530572
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Fourqurean, J.W., C.M. Duarte, H. Kennedy, N. Marba, M. Holmer, M.A. Mateo, E.T. Apostolaki, G.A. Kendrick, D. Krause-Jensen, K.J. McGlathery, O. Serrano. 2012. Seagrass ecosystems as a globally significant carbon stock. Nature Geoscience 5: 505-509. DOI: 10.1038/ngeo1477

Fourqurean, J.W., G.A. Kendrick, L.S. Collins, R.M. Chambers, M.A. Vanderklift. 2012. Carbon, nitrogen and phosphorus storage in subtropical seagrass meadows: examples from Florida Bay and Shark Bay. Marine and Freshwater Research 63: 967-983. DOI: 10.1071/MF12101
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Fourqurean, J.W., J. Schrlau. 2003. Changes in nutrient content and stable isotope ratios of C and N during decomposition of seagrasses and mangrove leaves along a nutrient availability gradient in Florida Bay, USA. Chemistry and Ecology 19(5): 373-390.

Fourqurean, J.W., J.C. Zieman. 2002. Nutrient content of the seagrass Thalassia testudinum reveals regional patterns of relative availability of nitrogen and phosphorus in the Florida Keys, USA. Biogeochemistry 61: 229-245. DOI: 10.1023/A:1020293503405
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Fourqurean, J.W., J.N. Boyer, M.J. Durako, L.N. Hefty, B.J. Peterson. 2003. Forecasting the response of seagrass distribution to changing water quality: statistical models from monitoring data. Ecological Applications 13(2): 474-489.
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Fourqurean, J.W., L.M. Rutten. 2004. The impact of Hurricane Georges on soft-bottom, backreef communities: site- and species-specific effects in south Florida seagrass beds. Bulletin of Marine Science 75(2): 239-257.

Fourqurean, J.W., M.F. Muth, J.N. Boyer. 2010. Epiphyte loads on seagrasses and microphytobenthos abundance are not reliable indicators of nutrient availability in coastal ecosystems. Marine Pollution Bulletin 60: 971-983. DOI: 10.1016/j.marpolbul.2010.03.003
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Fourqurean, J.W., S.P. Escorcia, W.T. Anderson, J.C. Zieman. 2005. Spatial and seasonal variability in elemental content, d13C and d15N of Thalassia testudinum from south Florida and its implication for ecosystem studies. Estuaries 28(3): 447-461.
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Fourqurean, J.W., T.J. Smith, J. Possley, T.M. Collins, D. Lee, S. Namoff. 2010. Are mangroves in the tropical Atlantic ripe for invasion? Exotic mangrove trees in the forests of south Florida. Biological Invasions 12: 2509-2522. DOI: 10.1007/s10530-009-9660-8
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Frankovich, T.A., A.R. Armitage, A. Wachnicka, E.E. Gaiser, J.W. Fourqurean. 2009. Nutrient effects on seagrass epiphyte community structure in Florida Bay. Journal of Phycology 45: 1010-1020. DOI: 10.1111/j.1529-8817.2009.00745.x
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Frankovich, T.A., D. Morrison, J.W. Fourqurean. 2011. Benthic Macrophyte Distribution and Abundance in Estuarine Mangrove Lakes and Estuaries: Relationships to Environmental Variables. Estuaries and Coasts 34: 20-31. DOI: 10.1007/s12237-010-9279-0
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Frankovich, T.A., E.E. Gaiser, J.C. Zieman, A. Wachnicka. 2006. Spatial and temporal distributions of epiphytic diatoms growing on Thalassia testudinum Banks ex Konig: Relationships to water quality. Hydrobiologia 569(1): 259-271. DOI: 10.1007/s10750-006-0136-x
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Frankovich, T.A., J.C. Zieman. 2005. Periphyton light transmission relationships in Florida Bay and the Florida Keys. Aquatic Botany 83(1): 14-30. DOI: 10.1016/j.aquabot.2005.05.003
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Frankovich, T.A., J.G. Barr, D. Morrison, J.W. Fourqurean. 2012. Differing temporal patterns of Chara hornemannii cover correlate to alternate regimes of phytoplankton and submerged aquatic-vegetation dominance. Marine and Freshwater Research 63: 1005-1014. DOI: 10.1071/MF12036
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Fraser, M.W., G.A. Kendrick, P. Grierson, J.W. Fourqurean, M.A. Vanderklift, D.I. Walker. 2012. Nutrient status of seagrasses cannot be inferred from system-scale distribution of phosphorus in Shark Bay, Western Australia. Marine and Freshwater Research 63: 1015-1026. DOI: 10.1071/MF12026

Frederick, P.C., D.E. Gawlik, J.C. Ogden, M.I. Cook, M. Lusk. 2009. The White Ibis and Wood Stork as indicators for restoration of the everglades ecosystem. Ecological Indicators 9(6): S83-S95. DOI: 10.1016/j.ecolind.2008.10.012

Gaiser, E.E.. 2009. Periphyton as an indicator of restoration in the Everglades. Ecological Indicators 9(6): S37-S45 . DOI: 10.1016/j.ecolind.2008.08.004

Gaiser, E.E.. 2011. Book Review: Lodge, T. 2010. The Everglades Handbook: Understanding the Ecosystem. 3rd Edition. CRC Press. Wetlands 31(2): 445-446. DOI: 10.1007/s13157-011-0149-8

Gaiser, E.E., A. Zafiris, P.L. Ruiz, F. Tobias, M.S. Ross. 2006. Tracking rates of ecotone migration due to salt-water encroachment using fossil mollusks in coastal South Florida. Hydrobiologia 569(1): 237-257. DOI: 10.1007/s10750-006-0135-y
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Gaiser, E.E., J. La Hee, F. Tobias, A. Wachnicka. 2010. Mastogloia smithii var lacustris Grun.: A Structural Engineer of Calcareous Mats in Karstic Subtropical Wetlands. Proceedings of the Academy of Natural Sciences of Philadelphia 160(1): 99-112. DOI: 10.1635/053.160.0111
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Gaiser, E.E., J.C. Trexler, J.H. Richards, D.L. Childers, D. Lee, A.L. Edwards, L.J. Scinto, K. Jayachandran, G.B. Noe, R.D. Jones. 2005. Cascading ecological effects of low-level phosphorus enrichment in the Florida Everglades. Journal of Environmental Quality 34(2): 717-723.
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Gaiser, E.E., J.H. Richards, J.C. Trexler, R.D. Jones, D.L. Childers. 2006. Periphyton responses to eutrophication in the Florida Everglades: Cross-system patterns of structural and compositional change. Limnology and Oceanography 51(1): 617-630.
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Gaiser, E.E., N. Deyrup, R. Bachmann, L. Battoe, H. Swain. 2009. Multidecadal climate oscillations detected in a transparency record from a subtropical Florida lake. Limnology and Oceanography 54(6): 2228-2232.
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Gaiser, E.E., N. Deyrup, R. Bachmann, L. Battoe, H. Swain. 2009. Effects of climate variability on transparency and thermal structure in subtropical, monomictic Lake Annie, Florida. Fundamental and Applied Limnology 175(3): 217-230. DOI: 10.1127/1863-9135/2009/0175-0217

Gaiser, E.E., P. McCormick, S.E. Hagerthey, A.D. Gottlieb. 2011. Landscape patterns of periphyton in the Florida Everglades. Critical Reviews in Environmental Science and Technology 41(S1): 92-120. DOI: 10.1080/10643389.2010.531192
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Gaiser, E.E., P. Sullivan, F. Tobias, A. Bramburger, J.C. Trexler. 2014. Boundary effects on benthic microbial phosphorus concentrations and diatom beta diversity in a hydrologically-modified, nutrient-limited wetland. Wetlands 34(Suppl 1): 55-64. DOI: 10.1007/s13157-013-0379-z
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Gaiser, E.E., R.F. Doren, P. McCormick, S. Newman, J.H. Richards, J.C. Trexler. 2008. Comment on "Estimating Ecological Thresholds for Phosphorus in the Everglades". Environmental Science & Technology 42: 6770-6771.
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Gandy, D.A., J.S. Rehage, J. Munyon, K.B. Gestring, J.I. Galvez. 2012. Canals as Vectors for Fish Movement: Potential Southward Range Expansion of Lepisosteus osseus L. (Longnose Gar) in South Florida. Southeastern Naturalist 11: 253-262.

Gao, M., B.R.T. Simoneit, M. Gantar, R. Jaffe. 2007. Occurrence and distribution of novel botryococcene hydrocarbons in freshwater wetlands of the Florida Everglades. Chemosphere 70: 224-236. DOI: 10.1016/j.chemosphere.2007.06.056
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Garvoille, R., L.A. Ogden, J. Onsted. (In Review). Landscape Legacies and the Production of Suburbia in Southern Florida. Cultural Geographies

Giacomini, H.C., D.L. DeAngelis, J.C. Trexler, M. PetrereJr.. 2013. Trait contributions to fish community assembly emerge from trophic interactions in an individual-based model. Ecological Modelling 251: 32-43. DOI: 10.1016/j.ecolmodel.2012.12.003
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Giblin, A.E., C.R. Tobias, B. Song, N. Weston, G.T. Banta, V.H. Rivera-Monroy. 2013. The importance of dissimilatory nitrate reduction to ammonium (DNRA) in the nitrogen cycle of coastal ecosystems. Oceanography 26: 124-131. DOI: 10.5670/oceanog.2013.54

Gil, M., A.R. Armitage, J.W. Fourqurean. 2006. Nutrient impacts on epifaunal density and species composition in a subtropical seagrass bed. Hydrobiologia 569(1): 437-447. DOI: 10.1007/s10750-006-0147-7
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Glibert, P.M., C. Heil, D.T. Rudnick, C.J. Madden, J.N. Boyer, S.P. Kelly. 2009. Florida Bay: Water quality status and trends, historic and emerging algal bloom problems. Contributions in Marine Science 38: 5-17.

Gondwe, B.R.N., S.-H. Hong, S. Wdowinski, P. Bauer-Gottwein. 2010. Hydrodynamics of the groundwater-dependent Sian-Ka'an wetlands, Mexico, from InSAR and SAR data. Wetlands 30(1): 1-13. DOI: 10.1007/s13157-009-0016-z

Goss, C., W.F. Loftus, J.C. Trexler. 2014. Seasonal Fish Dispersal in Ephemeral Wetlands of the Florida Everglades. Wetlands 34(Suppl 1): 147-157. DOI: 10.1007/s13157-013-0375-3
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Gottlieb, A.D., J.H. Richards, E.E. Gaiser. 2006. Comparative study of periphyton community structure in long and short-hydroperiod Everglades marshes. Hydrobiologia 569(1): 195-207. DOI: 10.1007/s10750-006-0132-1
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Green, D., J.C. Trexler, J.J. Lorenz, C.C. McIvor, T.E. Philippi. 2006. Spatial patterns of fish communities along two estuarine gradients in southern Florida . Hydrobiologia 569(1): 387-399. DOI: 10.1007/s10750-006-0144-x
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Green, T.W., D.H. Slone, E. Swain, M.S. Cherkiss, M. Lohmann, F.J. Mazzotti, K.G. Rice. 2014. Evaluating effects of Everglades restoration on American Crocodile populations in South Florida using a spatially-explicit, stage-based population model. Wetlands 34(Suppl 1): 213-224. DOI: 10.1007/s13157-012-0370-0

Groffman, P.M., J.M. Cavender-Bares, N. Bettez, J.M. Grove, S.J. Hall, J. Heffernan, S.E. Hobbie, K. Larson, J.M. Morse, C. Neill, K.C. Nelson, J. O'Neil-Dunne, L.A. Ogden, D.E. Pataki, C. Polsky, R. Roy Chowdhury, M.K. Steele. 2014. Ecological Homogenization of Urban USA. Frontiers in Ecology and the Environment 12: 74-81. DOI: 10.1890/120374
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Guevara, R., M. Ikenaga, A. Dean, C. Pisani, J.N. Boyer. (In Review). Long term nutrient enrichment triggers changes in sediment bacterial community structure in a subtropical seagrass-dominated estuary. Microbial Ecology

Hagerthey, S.E., B.J. Bellinger, K. Wheeler, M. Gantar, E.E. Gaiser. 2011. Everglades Periphyton: A Biogeochemical Perspective. Critical Reviews in Environmental Science and Technology 41(S1): 309-343. DOI: 10.1080/10643389.2010.531218
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Haigh, I.D., T. Wahl, E.J. Rohling, R.M. Price, C.B. Pattiaratchi, F.M. Calafat, S. Dangendorf. 2014. Timescales for detecting a significant acceleration in sea level rise. Nature Communications 5: 3635. DOI: 10.1038/ncomms4635
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Hajje, N., R. Jaffe. 2006. Molecular characterization of Cladium peat from the Florida Everglades: biomarker associations with humic fractions. Hydrobiologia 569(1): 99-112. DOI: 10.1007/s10750-006-0125-0
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Hanan, E., M.S. Ross. 2010. Across-scale patterning of plant-soil-water interactions surrounding tree islands in Southern Everglades landscapes . Landscape Ecology 25(3): 463-475. DOI: 10.1007/s10980-009-9426-9
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Hanan, E., M.S. Ross, P.L. Ruiz, J.P. Sah. 2010. Multi-scaled grassland-woody plant dynamics in the heterogeneous marl prairies of the southern Everglades. Ecosystems 13(8): 1256-1274. DOI: 10.1007/s10021-010-9386-6
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Happell, J.D., R.M. Price, Z. Top, P.K. Swart. 2003. Evidence for the removal of CFC-11, CFC-12, and CFC-113 at the ground water-surface water interface in the Everglades. Journal of Hydrology 279: 94-105. DOI: 10.1016/S0022-1694(03)00169-0

Harris, E., C. Polsky, K. Larson, R. Garvoille, D. Martin, J. Brumand, L.A. Ogden. 2012. Heterogeneity in Residential Yard Care: Evidence from Boston, Miami, and Phoenix. Human Ecology 40: 735-749. DOI: 10.1007/s10745-012-9514-3
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Harrison, E., J. Lorenz, J.C. Trexler. 2013. Per Capita Effects of Non-native Mayan Cichlids (Cichlasoma urophthalmus; Gunther) on Native Fish in the Estuarine Southern Everglades. Copeia 2013: 80-96. DOI: 10.1643/CE-11-182
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Harwell, M., B. Sharfstein. 2009. Submerged aquatic vegetation and bulrush in Lake Okeechobee as indicators of greater Everglades ecosystem restoration. Ecological Indicators 9(6): S46-S55. DOI: 10.1016/j.ecolind.2008.11.009
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He, D., R.N. Mead, L. Belicka, O. Pisani, R. Jaffe. 2014. Assessing source contributions to particulate organic matter in a subtropical estuary: A biomarker approach. Organic Geochemistry 75: 129-139. DOI: 10.1016/j.orggeochem.2014.06.012
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He, G., V. Engel, L. Leonard, A.L. Croft, D.L. Childers, M. Laas, Y. Deng, H. Solo-Gabriele. 2010. Factors Controlling Surface Water Flow in a Low-gradient Subtropical Wetland. Wetlands 30: 275-286. DOI: 10.1007/s13157-010-0022-1
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Heithaus, M.R., A.J. Wirsing, L.M. Dill. 2012. The ecological importance of intact top-predator populations: a synthesis of 15 years of research in a seagrass ecosystem. Marine and Freshwater Research 63: 1039-1050. DOI: 10.1071/MF12024

Heithaus, M.R., B. Delius, A.J. Wirsing, M. Dunphy-Daly. 2009. Physical factors influencing the distribution of a top predator in a subtropical oligotrophic estuary. Limnology and Oceanography 54(2): 472-482. DOI: 10.4319/lo.2009.54.2.0472
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Herbert, D.A., J.W. Fourqurean. 2008. Ecosystem structure and function still altered two decades after short-term fertilization of a seagrass meadow. Ecosystems 11: 688-700. DOI: 10.1007/s10021-008-9151-2
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Herbert, D.A., J.W. Fourqurean. 2009. Phosphorus availability and salinity control productivity and demography of the seagrass Thalassia testudinum in Florida Bay. Estuaries and Coasts 32: 188-201. DOI: 10.1007/s12237-008-9116-x
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Herbert, D.A., W.B. Perry, B.J. Cosby, J.W. Fourqurean. 2011. Projected reorganization of Florida Bay seagrass communities in response to increased freshwater delivery from the Everglades. Estuaries and Coasts 34(5): 973-992. DOI: 10.1007/s12237-011-9388-4
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Hong, S.-H., S. Wdowinski, S.-W. Kim. 2010. Evaluation of TerraSAR-X Observations for Wetland InSAR Application. IEEE Geosciences and Remote Sensing 48(2): 864-873. DOI: 10.1109/TGRS.2009.2026895
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Hong, S.-H., S. Wdowinski, S.-W. Kim, J.-S. Won. 2010. Multi-temporal monitoring of wetland water levels in the Florida Everglades using interferometric synthetic aperture radar (InSAR). Remote Sensing of Environment 114(11): 2436-2447. DOI: 10.1016/j.rse.2010.05.019
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Ikenaga, M., R. Guevara, C. Pisani, A. Dean, J.N. Boyer. 2010. Changes in Community Structure of Sediment Bacteria Along the Florida Coastal Everglades Marsh-Mangrove-Seagrass Salinity Gradient. Microbial Ecology 59(2): 284-295. DOI: 10.1007/s00248-009-9572-2
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Inglett, P.W., V.H. Rivera-Monroy, J. Wozniak. 2011. Biogeochemistry of Nitrogen Across the Everglades Landscape. Critical Reviews in Environmental Science and Technology 41(S1): 187-216. DOI: 10.1080/10643389.2010.530933
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Iwaniec, D., D.L. Childers, D. Rondeau, C.J. Madden, C.J. Saunders. 2006. Effects of hydrologic and water quality drivers on periphyton dynamics in the southern Everglades. Hydrobiologia 569(1): 223-235. DOI: 10.1007/s10750-006-0134-z
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Jaffe, R., A.I. Rushdi, P.M. Medeiros, B.R.T. Simoneit. 2006. Natural product biomarkers as indicators of sources and transport of sedimentary organic matter in a subtropical river. Chemosphere 64(11): 1870-1884. DOI: 10.1016/j.chemosphere.2006.01.048
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Jaffe, R., D. McKnight, N. Maie, R. Cory, W.H. McDowell, J.L. Campbell. 2008. Spatial and temporal variations in DOM composition in ecosystems: The importance of long-term monitoring of optical properties. Journal of Geophysical Research - Biogeosciences 113: G04032. DOI: 10.1029/2008JG000683
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Jaffe, R., J.N. Boyer, X. Lu, N. Maie, C. Yang, N.M. Scully, S. Mock. 2004. Source characterization of dissolved organic matter in a subtropical mangrove-dominated estuary by fluorescence analysis. Marine Chemistry 84(3-4): 195-210. DOI: 10.1016/j.marchem.2003.08.001
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Jaffe, R., R. Mead, M.E. Hernandez, M.C. Peralba, O.A. DiGuida. 2001. Origin and transport of sedimentary organic matter in two subtropical estuaries: A comparative, biomarker-based study. Organic Geochemistry 32(4): 507-526. DOI: 10.1016/S0146-6380(00)00192-3
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Jaffe, R., Y. Ding, J. Niggemann, A. Vahatalo, A. Stubbins, R.G.M. Spencer, J.L. Campbell, T. Dittmar. 2013. Global Charcoal Mobilization from Soils via Dissolution and Riverine Transport to the Oceans. Science 340: 345-347. DOI: 10.1126/science.1231476
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Jaffe, R., Y. Yamashita, N. Maie, W.J. Cooper, T. Dittmar, W. Dodds, J.B. Jones Jr., T. Myoshi, J.R. Ortiz-Zayas, D.C. Podgorski, A. Watanabe. 2012. Dissolved Organic Matter in Headwater Streams: Compositional Variability across Climatic Regions of North America. Geochimica et Cosmochimica Acta 94: 95-108. DOI: 10.1016/j.gca.2012.06.031
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Jerath, M., M. Bhat, V.H. Rivera-Monroy, E. Castañeda-Moya, M. Simard, R.R. Twilley. (In Press). An Economic Valuation of Carbon Storage in Mangrove Forests of the Florida Coastal Everglades. Ecological Economics

Jiang, J., D.L. DeAngelis, G. Anderson, T.J. Smith. 2014. Analysis and Simulation of Propagule Dispersal and Salinity Intrusion from Storm Surge on the Movement of a Marsh-Mangrove Ecotone in South Florida. Estuaries and Coasts 37: 24-35. DOI: 10.1007/s12237-013-9666-4
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Jimenez, K.L., G. Starr, C. Staudhammer, J. Schedlbauer, H. Loescher, S.L. Malone, S. Oberbauer. 2012. Carbon dioxide exchange rates from short- and long-hydroperiod Everglades freshwater marsh. Journal of Geophysical Research 117: G04009. DOI: 10.1029/2012JG002117
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Jones, V., C.J. Ruddell, G. Wainwright, H.H. Rees, R. Jaffe, G.A. Wolff. 2004. One-dimensional and two dimensional polyacrylamide gel electrophoresis: a tool for protein characterization in aquatic samples. Marine Chemistry 85(1-2): 63-73. DOI: 10.1016/j.marchem.2003.09.003
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Jones, V., K. Parish, A. Thomson, G.A. Wolff, N. Maie, R. Jaffe. 2006. Molecular characterization of proteinaceous material in the Florida coastal Everglades. Hydrobiologia 569(1): 129-133. DOI: 10.1007/s10750-006-0127-y
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Jones, V., M.J. Collins, K.E.H. Penkman, R. Jaffe, G.A. Wolff. 2005. An assessment of the microbial contribution to aquatic dissolved organic nitrogen using amino acid enantiomeric ratios. Organic Geochemistry 36(7): 1099-1107. DOI: 10.1016/j.orggeochem.2004.11.008

Jopp, F., D.L. DeAngelis, J.C. Trexler. 2010. Modeling seasonal dynamics of small fish cohorts in fluctuating freshwater marsh landscapes. Landscape Ecology 25(7): 1041-1054.

Kelble, C.R., P.B. Ortner, G.L. Hitchcock, M.J. Dagg, J.N. Boyer. 2010. Temporal and Spatial Variability of Mesozooplankton in a Shallow Sub-Tropical Bay: Influence of Top-Down Control. Estuaries and Coasts 33(3): 723-737. DOI: 10.1007/s12237-010-9270-9
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Kendrick, G.A., J.W. Fourqurean, M.W. Fraser, M.R. Heithaus, G. Jackson, K. Friedman, D. Hallac. 2012. Science behind management of Shark Bay and Florida Bay, two P-limited subtropical systems with different climatology and human pressures. Marine and Freshwater Research 63: 941-951. DOI: 10.1071/MF12280

Kennedy, H., J. Beggins, C.M. Duarte, J.W. Fourqurean, M. Holmer, N. Marba, J.J. Middelburg. 2010. Seagrass sediments as a global carbon sink: Isotopic constraints. Global Biogeochemical Cycles 24: GB4026. DOI: 10.1029/2010GB003848

Kline, J., W.F. Loftus, K. Kotun, J.C. Trexler, J.S. Rehage, J.J. Lorenz, M. Robinson. 2014. Recent Fish Introductions Into Everglades National Park: An Unforeseen Consequence of Water Management? Wetlands 34(Suppl 1): 175-187 175-187 175-187. DOI: 10.1007/s13157-012-0362-0
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Koch, G., S.E. Hagerthey, D.L. Childers, E.E. Gaiser. 2014. Examining seasonally pulsed detrital transport in the coastal Everglades using a sediment tracking technique. Wetlands 34(Suppl 1): 123-133. DOI: 10.1007/s13157-013-0388-y

Koch, G., Childers, D.L., P.A. Staehr, R.M. Price, S.E. Davis, E.E. Gaiser. 2012. Hydrological Conditions Control P Loading and Aquatic Metabolism in an Oligotrophic, Subtropical Estuary. Estuaries and Coasts 35(1): 292-307. DOI: 10.1007/s12237-011-9431-5
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Kotun, K., A. Renshaw. 2014. Taylor Slough Hydrology, Fifty years of water management 1961-2010. Wetlands 34(Suppl 1): 9-22. DOI: 10.1007/s13157-013-0441-x
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Krauss, K.W., R.R. Twilley, T.W. Doyle, E.S. Gardiner. 2006. Leaf gas exchange characteristics of three neotropical mangrove species in response to varying hydroperiod. Tree Physiology 26: 959-968.

Krauss, K.W., T.W. Doyle, R.R. Twilley, T.J. Smith, K.R.T. Whelan, J.K. Sullivan. 2005. Woody Debris in the Mangrove Forests of South Florida. Biotropica 37(1): 9-15. DOI: 10.1111/j.1744-7429.2005.03058.x
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Krauss, K.W., T.W. Doyle, R.R. Twilley, V.H. Rivera-Monroy, J.K. Sullivan. 2006. Evaluating the relative contributions of hydroperiod and soil fertility on growth of south Florida mangroves. Hydrobiologia 569(1): 311-324. DOI: 10.1007/s10750-006-0139-7

La Hee, J., E.E. Gaiser. 2012. Benthic diatom assemblages as indicators of water quality in the Everglades and three tropical karstic wetlands. Journal of the North American Benthological Society 31(1): 205-221. DOI: 10.1899/11-022.1
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Lagomasino, D., R.M. Price, D. Whitman, P.K. Campbell, A. Melesse. 2014. Estimating major ion and nutrient concentrations in mangrove estuaries in Everglades National Park using leaf and satellite reflectance. Remote Sensing of Environment 154(2014): 202-218. DOI: 10.1016/j.rse.2014.08.022

Lagomasino, D., R.M. Price, J. Herrera-Silveira, F. Miralles-Wilhelm, G. Merediz-Alonso, Y. Gomez-Hernandez. 2014. Connecting groundwater and surface water sources in a groundwater dependent coastal wetland: Sian Ka'an Biosphere Reserve, Quintana Roo, Mexico. Estuaries and Coasts DOI: 10.1007/s12237-014-9892-4

Larsen, L., N. Aumen, C. Bernhardt, V. Engel, T. Givnish, S.E. Hagerthey, J. Harvey, L. Leonard, P. McCormick, C. McVoy, G.B. Noe, M. Nungesser, K. Rutchey, F.H. Sklar, T. Troxler, J.C. Volin, D.A. Willard. 2011. Recent and Historic Drivers of Landscape Change in the Everglades Ridge, Slough, and Tree Island Mosaic. Critical Reviews in Environmental Science and Technology 41: 344-381. DOI: 10.1080/10643389.2010.531219
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Layman, C.A., M.S. Araujo, R. Boucek, E. Harrison, Z.R. Jud, P. Matich, C.M. Hammerschlag-Peyer, A.E. Rosenblatt, J.J. Vaudo, L.A. Yeager, D. Post, S. Bearhop. 2012. Applying Stable Isotopes to Examine Food Web Structure: An Overview of Analytical Tools. Biological Reviews 87: 542-562. DOI: 10.1111/j.1469-185X.2011.00208.x
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Lee, S.S., E.E. Gaiser, B. Van de Vijver, M.B. Edlund, S.A. Spaulding. 2014. Morphology and typification of Mastogloia smithii and M. lacustris, with descriptions of two new species from the Florida Everglades and the Caribbean region. Diatom Research 29(4): 325-350. DOI: 10.1080/0269249X.2014.889038
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Lee, S.S., E.E. Gaiser, J.C. Trexler. 2013. Diatom-based models for inferring hydrology and periphyton abundance in a subtropical karstic wetland: Implications for ecosystem-scale bioassessment. Wetlands 33: 157-173. DOI: 10.1007/s13157-012-0363-z
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Lee, S.S., F. Tobias, B. Van de Vijver. 2013. Envekadea metzeltinii sp nov., a new diatom (Bacillariophyta) species from the subtropical karstic wetlands of the Florida Everglades, USA. Phytotaxa 115: 15-24. DOI: 10.11646/phytotaxa.115.1.2
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Leonard, L., A.L. Croft, D.L. Childers, S. Mitchell-Bruker, H. Solo-Gabriele, M.S. Ross. 2006. Characteristics of surface-water flows in the ridge and slough landscape of Everglades National Park: implications for particulate transport. Hydrobiologia 569(1): 5-22. DOI: 10.1007/s10750-006-0119-y
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Liston, S.E.. 2006. Interactions between nutrient availability and hydroperiod shape macroinvertebrate communities in Florida Everglades marshes. Hydrobiologia 569(1): 343-357. DOI: 10.1007/s10750-006-0141-0
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Liston, S.E., J.C. Trexler. 2005. Spatiotemporal patterns in community structure of macroinvertebrates inhabiting calcareous periphyton mats. Journal of the North American Benthological Society 24(4): 832-844. DOI: 10.1899/04-067.1
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Liston, S.E., S. Newman, J.C. Trexler. 2008. Macroinvertebrate Community Response to Eutrophication in an Oligotrophic Wetland: An in situ Mesocosm Experiment. Wetlands 28(3): 686-694.
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Liu, G., M. Naja, P. Kalla, D. Scheidt, E.E. Gaiser, Y. Cai. 2011. Legacy and fate of mercury and methylmercury in the Florida Everglades. Environmental Science and Technology 45(2): 496-501. DOI: 10.1021/es101207f

Liu, K., H. Li, S.E. Davis. 2014. Benthic Exchange of C, N, and P Along the Estuarine Ecotone of Lower Taylor Slough, Florida (USA): Effect of Seasonal Flows and Phosphorus Availability. Wetlands 34(Suppl 1): 113-122. DOI: 10.1007/s13157-013-0431-z
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Lockwood, J.L., M.S. Ross, J.P. Sah. 2003. Smoke on the water: the interplay of fire and water flow on Everglades restoration. Frontiers in Ecology and the Environment 1(9): 462-468.
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Lopez, D.P., A. Jungman, J.S. Rehage. 2012. Nonnative African jewelfish are more fit but not bolder at the invasion front: a trait comparison across an Everglades range expansion. Biological Invasions 14: 2159-2174. DOI: 10.1007/s10530-012-0221-1
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Lorenz, J.J.. 2014. A Review of the Effects of Altered Hydrology and Salinity on Vertebrate Fauna and Their Habitats in Northeastern Florida Bay. Wetlands 34(Suppl 1): 189-200. DOI: 10.1007/s13157-013-0377-1
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Lorenz, J.J.. 2014. The Relationship Between Water Level, Prey Availability and Reproductive Success in Roseate Spoonbills Foraging in a Seasonally-Flooded Wetland While Nesting in Florida Bay. Wetlands 34(Suppl 1): 201-211. DOI: 10.1007/s13157-012-0364-y
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Lorenz, J.J., B. Langan-Mulrooney, P. Frezza, R.G. Harvey, F.J. Mazzotti. 2009. Roseate spoonbill reproduction as an indicator for restoration of the Everglades and the Everglades estuaries. Ecological Indicators 9(6): S96-S107. DOI: 10.1016/j.ecolind.2008.10.008
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Lorenz, J.J., J.E. Serafy. 2006. Subtroprical wetland fish assemblages and changing salinity regimes: Implications for Everglades restoration. Hydrobiologia 569(1): 401-422. DOI: 10.1007/s10750-006-0145-9

Lu, X.Q., N. Maie, J.V. Hanna, D.L. Childers, R. Jaffe. 2003. Molecular characterization of dissolved organic matter in freshwater wetlands of the Florida Everglades. Water Research 37(11): 2599-2606. DOI: 10.1016/S0043-1354(03)00081-2

Lu, Y., J.E. Bauer, E.A. Canuel, R.M. Chambers, R. Jaffe. 2013. Photochemical and microbial alteration of dissolved organic matter in temperate headwater streams associated with different land use. Journal of Geophysical Research 118(2): 566-580. DOI: 10.1002/jgrg.20048
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Lu, Y., J.E. Bauer, E.A. Canuel, R.M. Chambers, Y. Yamashita, R. Jaffe. 2014. Effects of land use on sources and ages of inorganic and organic carbon in temperate headwater streams. Biogeochemistry 119(1-3): 275-292. DOI: 10.1007/s10533-014-9965-2
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Madden, C.J., D.T. Rudnick, A.A. McDonald, K.M. Cunniff, J.W. Fourqurean. 2009. Ecological indicators for assessing and communicating seagrass status and trends in Florida Bay. Ecological Indicators 9(6): S68-S82. doi:10.1016/j.ecolind.2009.02.004. DOI: 10.1016/j.ecolind.2009.02.004
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Maie, N., C. Yang, T. Miyoshi, K. Parish, R. Jaffe. 2005. Chemical characteristics of dissolved organic matter in an oligotrophic subtropical wetland/estuarine ecosystem. Limnology and Oceanography 50(1): 23-35.
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Maie, N., J.N. Boyer, C. Yang, R. Jaffe. 2006. Spatial, geomorphological, and seasonal variability of CDOM in estuaries of the Florida Coastal Everglades. Hydrobiologia 569(1): 135 - 150. DOI: 10.1007/s10750-006-0128-x
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Maie, N., K. Parish, A. Watanabe, H. Knicker, R. Benner, T. Abe, K. Kaiser, R. Jaffe. 2006. Characterization of dissolved organic nitrogen in an oligotrophic subtropical coastal ecosystem. Geochimica et Cosmochimica Acta 70(17): 4491-4506. DOI: 10.1016/j.gca.2006.06.1554
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Maie, N., N.M. Scully, O. Pisani, R. Jaffe. 2007. Composition of a protein-like fluorophore of dissolved organic matter in coastal wetland and estuarine ecosystems. Water Research 41: 563-570. DOI: 10.1016/j.watres.2006.11.006
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Maie, N., O. Pisani, R. Jaffe. 2008. Mangrove tannins in aquatic ecosystems: their fate and possible role in dissolved organic nitrogen cycling. Limnology & Oceanography 53(1): 160-171.
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Maie, N., R. Jaffe, M. Toshikazu, D.L. Childers. 2006. Quantitative and qualitative aspects of dissolved organic carbon leached from senescent plants in an oligotrophic wetland. Biogeochemistry 78(3): 285-314. DOI: 10.1007/s10533-005-4329-6

Maie, N., Y. Yamashita, R. Cory, J.N. Boyer, R. Jaffe. 2012. Application of excitation emission matrix fluorescence monitoring in the assessment of spatial and seasonal drivers of dissolved organic matter composition: Sources and physical disturbance controls. Applied Geochemistry 27(4): 917-929. DOI: 10.1016/j.apgeochem.2011.12.021
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Malone, S.L., C. Staudhammer, H. Loescher, P.C. Olivas, S. Oberbauer, M.G. Ryan, J. Schedlbauer, G. Starr. 2014. Seasonal patterns in energy partitioning of two freshwater marsh ecosystems in the Florida Everglades. Journal of Geophysical Research: Biogeosciences 119(8): 1487-1505. DOI: 10.1002/2014JG002700

Malone, S.L., C. Staudhammer, H. Loescher, P.C. Olivas, S. Oberbauer, M.G. Ryan, J. Schedlbauer, G. Starr. (In Review). El Nino Southern Oscillation enhances CO2 exchange rates in freshwater marsh ecosystems in the Florida Everglades. PlosOne

Malone, S.L., C. Staudhammer, H. Loescher, P.C. Olivas, S. Oberbauer, M.G. Ryan, J. Schedlbauer, G. Starr. (In Review). Ecosystem resistance in the face of climate change: A case study from the freshwater marshes of the Florida Everglades. Ecosphere

Malone, S.L., G. Starr, C. Staudhammer, M.G. Ryan. 2013. Effects of simulated drought on the carbon balance of Everglades short-hydroperiod marsh. Global Change Biology 19: 2511-2523. DOI: 10.1111/gcb.12211
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Mancera-Pineda, J.E., R.R. Twilley, V.H. Rivera-Monroy. 2009. Carbon (d13c) and Nitrogen (d15n) Isotopic Discrimination in Mangroves in Florida Coastal Everglades as a Function of Environmental Stress. Contributions in Marine Science 38: 109-129.
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Matich, P., M.R. Heithaus. 2012. Effects of an extreme temperature event on the behavior and age structure of an estuarine top predator (Carcharhinus leucas). Marine Ecology Progress Series 447: 165-178. DOI: 10.3354/meps09497
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Matich, P., M.R. Heithaus. 2014. Multi-tissue stable isotope analysis and acoustic telemetry reveal seasonal variability in the trophic interactions of juvenile bull sharks in a coastal estuary. Journal of Animal Ecology 83(1): 199-213. DOI: 10.1111/1365-2656.12106
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Matich, P., M.R. Heithaus, C.A. Layman. 2010. Size-based variation in intertissue comparisons of stable carbon and nitrogen isotopic signatures of bull sharks (Carcharhinus leucas) and tiger sharks (Galeocerdo cuvier). Canadian Journal of Fisheries and Aquatic Sciences 67: 877-885. DOI: 10.1139/F10-037
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Matich, P., M.R. Heithaus, C.A. Layman. 2011. Contrasting patterns of individual specialization and trophic coupling in two marine apex predators. Journal of Animal Ecology 80(1): 294-305. DOI: 10.1111/j.1365-2656.2010.01753.x
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Mazzotti, F.J., G.R. Best, L.A. Brandt, M.S. Cherkiss, B.M. Jeffery, K.G. Rice. 2009. Alligators and crocodiles as indicators for restoration of Everglades ecosystems. Ecological Indicators 9(6): S137-S149. DOI: 10.1016/j.ecolind.2008.06.008
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McCarthy, L.C., W.F. Loftus, J.S. Rehage. 2012. Segregation of palaemonid shrimp along an Everglades estuarine gradient: Do multiple species have similar trophic function? Bulletin of Marine Science 88: 843-861. DOI: 10.5343/bms.2011.1058
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McElroy, T.C., K.L. Kandl, J.C. Trexler. 2012. Temporal Population Genetic Structure of Eastern Mosquitofish in a Dynamic Aquatic Landscape. Journal of Heredity 102(6): 678-687. DOI: 10.1093/jhered/esr088
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Mead, R.N., Y. Xu, J. Chong, R. Jaffe. 2005. Sedimentary organic matter source assessment in a sub-tropical wetland and estuarine environment using the molecular distribution and carbon isotopic composition of n-alkanes. Organic Geochemistry 36(3): 363-370. DOI: 10.1016/j.orggeochem.2004.10.003
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Michot, B., E. Meselhe, V.H. Rivera-Monroy, C. Coronado-Molina, R.R. Twilley. 2011. A tidal creek water budget: Estimation of groundwater discharge and overland flow using hydrologic modeling in the Southern Everglades. Estuarine, Coastal and Shelf Science 93(4): 438-448. DOI: 10.1016/j.ecss.2011.05.018
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Moses, C., W.T. Anderson, C.J. Saunders, F.H. Sklar. 2013. Regional climate gradients in precipitation and temperature in response to climate teleconnections in the Greater Everglades ecosystem of South Florida. Journal of Paleolimnology 49(1): 5-14. DOI: 10.1007/s10933-012-9635-0
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Mukherjee, S., M.R. Heithaus, J.C. Trexler, J. Ray-Mukherjee, J.J. Vaudo. 2014. Perceived Risk of Predation Affects Reproductive Life-History Traits in Gambusia holbrooki, but Not in Heterandria formosa. PLoS ONE 9(2): e88832. DOI: 10.1371/journal.pone.0088832

Neto, R., R.N. Mead, W.J. Louda, R. Jaffe. 2006. Organic biogeochemistry of detrital flocculent material (floc) in a subtropical, coastal wetland. Biogeochemistry 77: 283-304. DOI: 10.1007/s10533-005-5042-1

Nifong, J., A.E. Rosenblatt, N. Johnson, W. Barichivich, B. Silliman, M.R. Heithaus. 2012. American alligator digestion rate of blue crabs and its implications for stomach contents analysis. Copeia 3: 419-423. DOI: 10.1643/CE-11-177
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Nodine, E., E.E. Gaiser. 2014. Distribution of Diatoms Along Environmental Gradients in the Charlotte Harbor, Florida (USA), Estuary and Its Watershed: Implications for Bioassessment of Salinity and Nutrient Concentrations. Estuaries and Coasts 37(4): 864-879. DOI: 10.1007/s12237-013-9729-6
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Noe, G., D.L. Childers, R.D. Jones. 2001. Phosphorus biogeochemistry and the impacts of phosphorus enrichment: Why are the Everglades so unique. Ecosystems 4(7): 603-624. DOI: 10.1007/s10021-001-0032-1
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Noe, G.B., D.L. Childers. 2007. Phosphorus budgets in Everglades wetland ecosystems: The effects of hydrology and nutrient enrichment. Wetlands Ecology and Management 15: 189-205. DOI: 10.1007/s11273-006-9023-5
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Noe, G.B., D.L. Childers, A.L. Edwards, E. Gaiser, K. Jayachandran, D. Lee, J. Meeder, J. Richards, L.J. Scinto, J.C. Trexler, R.D. Jones. 2002. Short-term changes in phosphorus storage in an oligotrophic Everglades wetland ecosystem receiving experimental nutrient enrichment. Biogeochemistry 59(3): 239-267. DOI: 10.1023/A:1016090009874
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Noe, G.B., L.J. Scinto, J. Taylor, D.L. Childers, R.D. Jones. 2003. Phosphorus cycling and partitioning in an oligotrophic Everglades wetland ecosystem: a radioisotope tracing study. Freshwater Biology 48(11): 1993-2008. DOI: 10.1046/j.1365-2427.2003.01143.x
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O'Halloran, T.L., B.E. Law, M. Goulden, Z. Wang, J.G. Barr, C. Schaaf, M. Brown, J.D. Fuentes, M. Gockede, A. Black, V. Engel. 2011. Radiative forcing of natural forest disturbances. Global Change Biology 18(2): 555-565. DOI: 10.1111/j.1365-2486.2011.02577.x
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Obaza, A., D.L. DeAngelis, J.C. Trexler. 2011. Using data from an encounter sampler to model fish dispersal. Journal of Fish Biology 78(2): 495-513. DOI: 10.1111/j.1095-8649.2010.02867.x
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Ogden, L.A.. 2008. The Everglades Ecosystem and the Politics of Nature. American Anthropologist 110(1): 21-32.
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Ogden, L.A., N. Heynen, U. Oslender, P. West, K. Kassam, P. Robbins. 2013. Global Assemblages, Resilience, and Earth Stewardship in the Anthropocene. Frontiers in Ecology and the Environment 7: 341-347. DOI: 10.1890/120327
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Ogden, L.A., W. Hall, K. Tanita. 2013. Animals, Plants and People: A Review of Multispecies Ethnography. Environment & Society 4: 5-24. DOI: 10.3167/ares.2013.040102

Olson, E.L., A.K. Salomon, A.J. Wirsing, M.R. Heithaus. 2012. Large-scale movement patterns of male loggerhead sea turtles (Caretta caretta) in Shark Bay, Australia. Marine and Freshwater Research 63: 1108-1116. DOI: 10.1071/MF12030
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Onsted, J.. 2010. Agricultural Retention in California: Modeling the Effectiveness of the Williamson Act as Public Policy. The California Geographer 50
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Onsted, J., K. Clarke. 2011. Using Cellular automata to forecast enrollment in differential assessment programs. Environment and Planning B 38(2): 829-849. DOI: 10.1068/b37010
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Onsted, J., K. Clarke. 2012. The inclusion of differentially assessed lands in urban growth model calibration: a comparison of two approaches using SLEUTH. International Journal of GIS 26: 881-898. DOI: 10.1080/13658816.2011.617305
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Onsted, J., R. Roy Chowdhury. 2014. Does zoning matter? A comparative analysis of landscape change in Redland, Florida using cellular automata. Landscape and Urban Planning 121: 1-18. DOI: 10.1016/j.landurbplan.2013.09.007
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Orem, W.H., H.C. Fitz, D. Krabbenhoft, M. Tate, C. Gilmour, M. Shafer. (In Review). Modeling sulfate transport and distribution and methylmercury production associated with aquifer storage and recovery implementation in the Everglades Protection Area. Sustainability of Water Quality and Ecology

Osborne, T.Z., K.R. Reddy, L.R. Ellis, N. Aumen, D.D. Surratt, M.S. Zimmerman, J. Sadle. 2014. Evidence of Recent Phosphorus Enrichment in Surface Soils of Taylor Slough and Northeast Everglades National Park. Wetlands 34(Suppl 1): 37-45. DOI: 10.1007/s13157-013-0381-5

Parkos, J.J.III, C.R. RuetzIII, J.C. Trexler. 2011. Disturbance regime and limits on benefits of refuge use for fishes in a fluctuating hydroscape. Oikos 120(10): 1519-1530. DOI: 10.1111/j.1600-0706.2011.19178.x
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Pearce, C., H. Cremer, E. Lammertsma, F. Wagner-Cremer. 2013. A 2,500-year record of environmental change in Highland Hammock State Park (Central Florida, U.S.A.) inferred from siliceous microfossils. Journal of Paleolimnology 49(1): 31-43. DOI: 10.1007/s10933-011-9557-2
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Peterson, B.J., C.D. Rose, L.M. Rutten, J.W. Fourqurean. 2002. Disturbance and recovery following catastrophic grazing: studies of a successional chronosequence in a seagrass bed. Oikos 97(3): 361-370. DOI: 10.1034/j.1600-0706.2002.970306.x
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Peterson, B.J., F.J. Jochem, J.W. Fourqurean. 2006. Potential role of sponge communities controlling phytoplankton blooms in Florida Bay. Marine Ecology Progress Series 328: 93-103.
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Pickett, S.T.A., C.G. Boone, B.P. McGrath, M.L. Cadenasso, D.L. Childers, L.A. Ogden, M. McHale, J.M. Grove. 2013. Ecological Science and Transformation to the Sustainable City. Cities 32: S10-S20. DOI: 10.1016/j.cities.2013.02.008

Pierce, B., P. Mozumder. 2014. Perceptions and preferences of commercial fishers for dedicated access privilege framework in a multispecies fishery. Marine Policy 45: 52-59. DOI: 10.1016/j.marpol.2013.11.006

Pisani, O., Y. Yamashita, R. Jaffe. 2011. Photo-dissolution of flocculent, detrital material in aquatic environments: Contributions to the dissolved organic matter pool. Water Research 45(13): 3836-3844. DOI: 10.1016/j.watres.2011.04.035
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Pisani, O., William J. Louda, R. Jaffe. 2013. Biomarker assessment of spatial and temporal changes in the composition of flocculent material (floc) in the subtropical wetland of the Florida Coastal Everglades. Environmental Chemistry DOI: 10.1071/EN13062
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Platt, S.G., R.M. Elsey, H. Liu, T.R. Rainwater, J. Nifong, A.E. Rosenblatt, M.R. Heithaus, F.J. Mazzotti. 2013. Frugivory and seed dispersal by crocodilians: an overlooked form of saurochory? Journal of Zoology 291(2): 87-99. DOI: 10.1111/jzo.12052
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Polsky, C., J.M. Grove, C. Knudson, P.M. Groffman, N. Bettez, J. Cavendar-Bares, S.J. Hall, J. Heffernan, S.E. Hobbie, K. Larson, J.M. Morse, C. Neill, K.C. Nelson, L.A. Ogden, J. O'Neill-Dunne, D.E. Pataki, R. Roy Chowdhury, M.K. Steele. 2014. Assessing the homogenization of urban land management with an application to US residential lawn care . Proceedings of the National Academy of Sciences of the United States 111(12): 4432-4437. DOI: 10.1073/pnas.1323995111
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Poret, N., R.R. Twilley, V.H. Rivera-Monroy, C. Coronado-Molina. 2007. Belowground Decomposition of Mangrove Roots in Florida Coastal Everglades. Estuaries and Coasts. Estuaries and Coasts 30(3): 491-496.
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Porter-Whitaker, A.E., J.S. Rehage, S.E. Liston, W.F. Loftus. 2012. Multiple predator effects and native prey responses to two non-native Everglades cichlids. Ecology of Freshwater Fish 21(3): 375-385. DOI: 10.1111/j.1600-0633.2012.00557.x
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Price, R.M., G. Skrzypek, P. Grierson, P.K. Swart, J.W. Fourqurean. 2012. The use of stable isotopes of oxygen and hydrogen to identify water sources in two hypersaline estuaries with different hydrologic regimes . Marine and Freshwater Research 63: 952-966. DOI: 10.1071/MF12042
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Price, R.M., J.D. Happell, Z. Top, P.K. Swart. 2003. Use of tritium and helium to define groundwater flow conditions in Everglades National Park. Water Resources Research 39(9): 1267. DOI: 10.1029/2002WR001929

Price, R.M., M.R. Savabi, J.L. Jolicoeur, S. Roy. 2010. Adsorption and desorption of phosphate on limestone in experiments simulating seawater intrusion. Applied Geochemistry 25(7): 1085-1091. DOI: 10.1016/j.apgeochem.2010.04.013

Price, R.M., P.K. Swart, H.E. Willoughby. 2008. Seasonal and spatial variation in the stable isotopic composition (d18O and dD) of precipitation in south Florida. Journal of Hydrology 358: 193-205. DOI: 10.1016/j.jhydrol.2008.06.003
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Price, R.M., P.K. Swart, J.W. Fourqurean. 2006. Coastal groundwater discharge - an additional source of phosphorus for the oligotrophic wetlands of the Everglades. Hydrobiologia 569(1): 23-36. DOI: 10.1007/s10750-006-0120-5
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Price, R.M., W.K. Nuttle, B.J. Cosby, P.K. Swart. 2007. Variation and Uncertainty in Evaporation from a Subtropical Estuary: Florida Bay. Estuaries and Coasts 30(3): 497-506.

Quillen, A., E.E. Gaiser, E. Grimm. 2013. Diatom-based paleolimnological reconstruction of regional climate and local land-use change from a protected sinkhole lake in southern Florida, U.S.A. . Journal of Paleolimnology 49(1): 15-30. DOI: 10.1007/s10933-011-9558-1
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Read, J., D. Hamilton, I. Jones, K. Muraoka, R. Kroiss, C. Wu, E.E. Gaiser. 2011. Derivation of lake mixing and stratification indices from high-resolution lake buoy data. Environmental Modelling and Software 26(11): 1325-1336. DOI: 10.1016/j.envsoft.2011.05.006
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Rehage, J.S., J.C. Trexler. 2006. Assessing the net effect of anthropogenic disturbance on aquatic communities in wetlands: Community structure relative to distance from canals. Hydrobiologia 569(1): 359-373. DOI: 10.1007/s10750-006-0142-z
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Rehage, J.S., K.L. Dunlop, W.F. Loftus. 2009. Antipredator Responses by Native Mosquitofish to Non-Native Cichlids: An Examination of the Role of Prey Naivete'. Ethology 115: 1046-1056. DOI: 10.1111/j.1439-0310.2009.01694.x
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Rehage, J.S., R. Boucek. (In Review). Seasonal wetland hydrology drives predator and prey co-occurrence in a subtropical estuary: Implications for trophic dynamics. Ecological Applications

Rehage, J.S., R. Boucek, E. Cline, M.I. Cook, R.M. Kobza, A.K. Saha. 2013. Turning passive detection systems into field experiments: an application using wetland fishes and enclosures to track fine-scale movement and habitat choice. Acta Ethologica DOI: 10.1007/s10211-013-0154-4
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Rehage, J.S., R. Boucek, E. Cline, M.I. Cook, R.M. Kobza, A.K. Saha. 2014. Turning passive detection systems into field experiments: an application using wetland fishes and enclosures to track fine-scale movement and habitat choice. Acta Ethologica 17(1): 53-61. DOI: 10.1007/s10211-013-0154-4

Rehage, J.S., S.E. Liston, K.J. Dunker, W.F. Loftus. 2014. Fish Community Responses to the Combined Effects of Decreased Hydroperiod and Nonnative Fish Invasions in a Karst Wetland: Are Everglades Solution Holes Sinks for Native Fishes? Wetlands 34(Suppl 1): 159-173. DOI: 10.1007/s13157-012-0361-1
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Rehage, J.S., W.F. Loftus. 2007. Seasonal fish community variation in headwater mangrove creeks in the southwestern Everglades: an examination of their role as dry-down refuges. Bulletin of Marine Science 80(3): 625-645.
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Richards, J.H., M. Dow, T. Troxler. 2011. Modeling Nymphoides architecture: A morphological analysis of Nymphoides aquatica (Menyanthaceae). American Journal of Botany 97(11): 1761-1771. DOI: 10.3732/ajb.1000242

Richards, J.H., T. Troxler, D. Lee, M.S. Zimmerman. 2011. Experimental determination of effects of water depth on Nymphaea odorata growth, morphology and biomass allocation . Aquatic Botany 95(1): 9-16. DOI: 10.1016/j.aquabot.2011.03.002

Rivera-Monroy, V.H., K. de Mutsert, R.R. Twilley, E. Castañeda-Moya, M.M. Romigh, S.E. Davis. 2007. Patterns of nutrient exchange in a riverine mangrove forest in the Shark River Estuary, Florida, USA. Hidrobiologica 17(2): 169-178.
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Rivera-Monroy, V.H., R.R. Twilley, D. Bone, D.L. Childers, C. Coronado-Molina, I.C. Feller, J.A. Herrerra-Silviera, R. Jaffe, J.E. Mancera, E. Rejmankova, J.E. Salisbury. 2004. A conceptual framework to develop long-term ecological research and management objectives in the wider Caribbean Region. BioScience 54(9): 843-856.

Rivera-Monroy, V.H., R.R. Twilley, J.E. Mancera, A. Alcantara-Eguren, E. Castañeda-Moya, Casas O. Monroy, P. Reyes, J. Restrepo, L. Perdomo, E. Campos, G. Cotes, E. Villoria. 2007. Adventures and Misfortunes in Macondo: Rehabilitation of the Cienaga Grande. Ecotropicos 19(2): 72-93.
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Rivera-Monroy, V.H., R.R. Twilley, J.E. Mancera-Pineda, C.J. Madden, A. Alcantara-Eguren, E.B. Moser, B.F. Jonsson, E. Castañeda-Moya, O. Casas-Monroy, P. Reyes-Forero, J. Restrepo. 2011. Salinity and Chlorophyll a as Performance Measures to Rehabilitate a Mangrove-Dominated Deltaic Coastal Region: the Cienaga Grande de Santa Marta-Pajarales Lagoon Complex, Colombia. Estuaries and Coasts 34(1): 1-19. DOI: 10.1007/s12237-010-9353-7
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Rivera-Monroy, V.H., R.R. Twilley, S.E. Davis, D.L. Childers, M. Simard, R.M. Chambers, R. Jaffe, J.N. Boyer, D.T. Rudnick, K. Zhang, E. Castañeda-Moya, S.M.L. Ewe, R.M. Price, C. Coronado-Molina, M.S. Ross, T.J. Smith, B. Michot, E. Meselhe, W.K. Nuttle, T. Troxler, G.B. Noe. 2011. The Role of the Everglades Mangrove Ecotone Region (EMER) in Regulating Nutrient Cycling and Wetland Productivity in South Florida. Critical Reviews in Environmental Science and Technology 41(S1): 633-669. DOI: 10.1080/10643389.2010.530907
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Robertson, B.A., J.S. Rehage, A. Sih. 2013. Ecological novelty and the emergence of evolutionary traps. Trends in Ecology & Evolution DOI: 10.1016/j.tree.2013.04.004
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Romera-Castillo, C., M. Chen, Y. Yamashita, R. Jaffe. 2014. Fluorescence characteristics of size-fractionated dissolved organic matter: Implications for a molecular assembly based structure? Water Research 55: 40-51. DOI: 10.1016/j.watres.2014.02.017
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Romero, L.M., J.W. Fourqurean, T.J. Smith. 2005. Changes in mass and nutrient content of wood during decomposition in a South Florida mangrove forest. Journal of Ecology 93(3): 618-631. DOI: 10.1111/j.1365-2745.2005.00970.x

Romigh, M.M., S.E. Davis, V.H. Rivera-Monroy, R.R. Twilley. 2006. Flux of organic carbon in a riverine mangrove wetland in the Florida Coastal Everglades. Hydrobiologia 569(1): 505-516. DOI: 10.1007/s10750-006-0152-x
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Romolini, M., S. Record, R. Garvoille, R. Stuart Geiger, Y. Marusenko. 2013. The Next Generation of Scientists: Examining the Experiences of Graduate Students in Network-Level Science. Ecology and Society 18: 42. DOI: 10.5751/ES-05606-180342

Rosenblatt, A.E., J. Nifong, M.R. Heithaus, F.J. Mazzotti, M.S. Cherkiss, B.M. Jeffery, R.M. Elsey, R.A. Decker, B. Silliman, L.J. GuilletteJr., R.H. Lowers, J.C. Larson. 2014 (In Press). Factors affecting individual foraging specialization and temporal diet stability across the range of a large "generalist" apex predator. Oecologia

Rosenblatt, A.E., J. Nifong, M.R. Heithaus, M.W. Parry, F.J. Mazzotti. 2014. New record of Everglades mink in Everglades National Park from the stomach of an American alligator. Southeastern Naturalist 13(3): N22-N25.
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Rosenblatt, A.E., M.R. Heithaus. 2011. Does variation in movement tactics and trophic interactions among American alligators create habitat linkages? Journal of Animal Ecology 80(4): 786-798. DOI: 10.1111/j.1365-2656.2011.01830.x
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Rosenblatt, A.E., M.R. Heithaus. 2013. Slow isotope turnover rates and low discrimination values for three tissues in the American alligator: implications for interpretation of ectotherm stable isotope data. Physiological and Biochemical Zoology 86: 137-148. DOI: 10.1086/668295
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Rosenblatt, A.E., M.R. Heithaus, F.J. Mazzotti, M.S. Cherkiss, B.M. Jeffery. 2013. Intra-population variation in activity ranges, diel patterns, movement rates, and habitat use of American alligators in a subtropical estuary. Estuarine, Coastal and Shelf Science 135: 182-190. DOI: 10.1016/j.ecss.2013.10.008

Rosenblatt, A.E., M.R. Heithaus, M.E. Mather, P. Matich, J. Nifong, W.J. Ripple, B. Silliman. 2013. The roles of large top predators in coastal ecosystems: New insights from long term ecological research. Oceanography 26: 156-167. DOI: 10.5670/oceanog.2013.59
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Rosenblatt, A.E., S. Zona, M.R. Heithaus, F.J. Mazzotti. 2014. Are seeds consumed by crocodilians viable? A test of the crocodilian saurochory hypothesis. Southeastern Naturalist 13(3): N26-N29.
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Ross, M.S., D.E. Ogurcak, J.P. Sah, P.L. Ruiz. 2010. Using Florida Keys Reference Sites As a Standard for Restoration of Forest Structure in Everglades Tree Islands. International Journal of Forestry Research 2010(Article ID 176909): 8 pages. DOI: 10.1155/2010/176909
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Ross, M.S., D.R. Reed, J.P. Sah, P.L. Ruiz, M. Lewin. 2003. Vegetation:environment relationships and water management in Shark Slough, Everglades National Park. Wetlands Ecology and Management 11(5): 291-303. DOI: 10.1023/B:WETL.0000005541.30283.11
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Ross, M.S., J.J. O'Brien, G. Ford, K. Zhang, A. Morkill. 2009. Disturbance and the rising tide: the challenge of biodiversity management on low-island ecosystems. Frontiers in Ecology and the Environment 7: 471-478. DOI: 10.1890/070221

Ross, M.S., J.P. Sah. 2011. Forest resource islands in a sub-tropical marsh: soil-site relationships in Everglades hardwood hammocks. Ecosystems 14(4): 632-645. DOI: 10.1007/s10021-011-9433-y
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Ross, M.S., J.P. Sah, J.F. Meeder, P.L. Ruiz, G.J. Telesnicki. 2014. Compositional Effects of Sea-Level Rise in a Patchy Landscape: The Dynamics of Tree Islands in the Southeastern Coastal Everglades. Wetlands 34(Suppl 1): 91-100. DOI: 10.1007/s13157-013-0376-2

Ross, M.S., P.L. Ruiz, J.P. Sah, E. Hanan. 2009. Chilling damage in a changing climate in coastal landscapes of the sub-tropical zone: a case study from south Florida. Global Change Biology 15(7): 1817-1832. DOI: 10.1111/j.1365-2486.2009.01900.x
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Ross, M.S., S. Mitchell-Bruker, J.P. Sah, S. Stothoff, P.L. Ruiz, D.R. Reed, K. Jayachandran, C.L. Coultas. 2006. Interaction of hydrology and nutrient limitation in the ridge and slough landscape of the southern Everglades. Hydrobiologia 569(1): 37-59. DOI: 10.1007/s10750-006-0121-4
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Roy Chowdhury, R., K. Larson, J.M. Grove, C. Polsky, E. Cook, J. Onsted, L.A. Ogden. 2011. A Multi-Scalar Approach to Theorizing Socio-Ecological Dynamics of Urban Residential Landscapes. Cities and the Environment (CATE) 4(1): Article 6.

Rubio, G.A., D.L. Childers. 2006. Controls of Herbaceous Litter Decomposition in the Estuarine Ecotones of the Florida Everglades. Estuaries and Coasts 29(2): 257-268. DOI: 10.1007/BF02781994
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Ruehl, C., J.C. Trexler. 2011. Comparison of snail density, standing stock, and body size between Caribbean karst wetlands and other freshwater ecosystems. Hydrobiologia 665: 1-13. DOI: 10.1007/s10750-011-0612-9
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Ruehl, C., J.C. Trexler. 2013. A suite of prey traits determine predator and nutrient enrichment effects in a tri-trophic food web. Ecosphere 4: 75. DOI: 10.1890/ES13-00065.1
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Ruiz, P.L., J.P. Sah, M.S. Ross, A.A. Spitzig. 2013. Tree island response to fire and flooding in the short-hydroperiod marl prairie grasslands of the Florida Everglades. Fire Ecology 9(1): 38-54. DOI: 10.4996/fireecology.0901038
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Ruiz-Halpern, S., S.A. Macko, J.W. Fourqurean. 2008. The effects of manipulation of sedimentary iron and organic matter on sediment biogeochemistry and seagrasses in a subtropical carbonate environment. Biogeochemistry 87: 113-126. DOI: 10.1007/s10533-007-9162-7
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Sah, J.P., M.S. Ross, S. Saha, P.R. Minchin, J. Sadle. 2014. Trajectories of Vegetation Response to Water Management in Taylor Slough, Everglades National Park, Florida. Wetlands 34(Suppl 1): 65-79. DOI: 10.1007/s13157-013-0390-4

Saha, A.K., C. Moses, R.M. Price, V. Engel, T.J. Smith, G. Anderson. 2012. A Hydrological Budget (2002-2008) for a Large Subtropical Wetland Ecosystem Indicates Marine Groundwater Discharge Accompanies Diminished Freshwater Flow . Journal of Estuaries and Coasts 35(2): 459-474. DOI: 10.1007/s12237-011-9454-y
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Saha, A.K., K.S. Carvalho, P. Moutinho, L.S.L. Sternberg. 2012. Effect of leaf-cutting ant nests on plant growth in an oligotrophic Amazon rain forest. Journal of Tropical Ecology 28(3): 263-270. DOI: 10.1017/S0266467412000107
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Saha, A.K., L.d.S.L. Sternberg, M.S. Ross, F. Miralles-Wilhelm. 2010. Water source utilization and foliar nutrient status differs between upland and flooded plant communities in wetland tree islands. Wetlands Ecology and Management 18: 343-355. DOI: 10.1007/s11273-010-9175-1

Saha, A.K., S. Saha, J. Sadle, J. Jiang, M.S. Ross, R.M. Price, L.S.L. Sternberg, K.S. Wendelberger. 2011. Sea level rise and South Florida coastal forests. Climate Change 107(1-2): 81-108. DOI: 10.1007/s10584-011-0082-0
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Sanchez, C., E.E. Gaiser, C.J. Saunders, A. Wachnicka, N. Oehm. 2013. Challenges in using siliceous subfossils as a tool for inferring past water level and hydroperiod in Everglades marshes. Journal of Paleolimnology 49(1): 45-66. DOI: 10.1007/s10933-012-9624-3
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Sargeant, B., E.E. Gaiser, J.C. Trexler. 2010. Biotic and Abiotic Determinants of Intermediate-Consumer Trophic Diversity in the Florida Everglades. Marine & Freshwater Research 61: 11-22. DOI: 10.1071/MF08322
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Sargeant, B., E.E. Gaiser, J.C. Trexler. 2011. Indirect and direct controls of macroinvertebrates and small fish by abiotic factors and trophic interactions in the Florida Everglades. Freshwater Biology 56(11): 2334-2346. DOI: 10.1111/j.1365-2427.2011.02663.x
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Saunders, C.J., J.P. Megonigal, J.F. Reynolds. 2006. Comparison of belowground biomass in C3- and C4-dominated mixed communities in a Chesapeake Bay brackish marsh. Plant and Soil 280: 305-322. DOI: 10.1007/s11104-005-3275-3

Saunders, C.J., M. Gao, J. Lynch, R. Jaffe, D.L. Childers. 2006. Using soil profiles of seeds and molecular markers as proxies for sawgrass and wet prairie slough vegetation in Shark Slough, Everglades National Park. Hydrobiologia 569(1): 475-492. DOI: 10.1007/s10750-006-0150-z

Schedlbauer, J., J. Munyon, S. Oberbauer, E.E. Gaiser, G. Starr. 2012. Controls on ecosystem carbon dioxide exchange in short- and long-hydroperiod Florida Everglades freshwater marshes. Wetlands 32: 801-812. DOI: 10.1007/s13157-012-0311-y
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Schedlbauer, J., S. Oberbauer, G. Starr, K.L. Jimenez. 2010. Seasonal differences in the CO2 exchange of a short-hydroperiod Florida Everglades marsh. Agricultural and Forest Meteorology 150(7-8): 994-1006. DOI: 10.1016/j.agrformet.2010.03.005
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Schedlbauer, J., S. Oberbauer, G. Starr, K.L. Jimenez. 2011. Controls on sensible heat and latent energy fluxes from a short-hydroperiod Florida Everglades marsh. Journal of Hydrology 411: 331-341. DOI: 10.1016/j.jhydrol.2011.10.014
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Scully, N.M., N. Maie, S. Dailey, J. Boyer, R.D. Jones, R. Jaffe. 2004. Early diagenesis of plant-derived dissolved organic matter along a wetland, mangrove, estuary ecotone. Limnology and Oceanography 49(5): 1667-1678.
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Sergio, F., O.J. Schmitz, C.J. Krebs, R.D. Holt, M.R. Heithaus, A.J. Wirsing, W.J. Ripple, E. Ritchie, D. Ainley, D. Oro, Y. Jhala, F. Hiraldo. 2014. Towards a cohesive, holistic view of top predation: a definition, synthesis and perspective. Oikos 123(10): 1234-1243.
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Shank, G.C., A. Evans, Y. Yamashita, R. Jaffe. 2011. Solar radiation-enhanced dissolution of particulate organic matter from coastal marine sediments. Limnology and Oceanography 56(2): 577-588. DOI: 10.4319/lo.2011.56.2.0577
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Sih, A., D.I. Bolnick, B. Luttbeg, J.L. Orrock, S.D. Peacor, L.M. Pintor, E. Preisser, J.S. Rehage, J.R. Vonesh. 2010. Predator-prey naivete', antipredator behavior, and the ecology of predator invasions. Oikos 119(4): 610-621. DOI: 10.1111/j.1600-0706.2009.18039.x

Simard, M., K. Zhang, V.H. Rivera-Monroy, M.S. Ross, P.L. Ruiz, E. Castañeda-Moya, R.R. Twilley, E. Rodriguez. 2006. Mapping Height and Biomass of Mangrove Forests in Everglades National Park with SRTM Elevation Data. Photogrammetric Engineering and Remote Sensing 72(3): 299-311.
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Simoneit, B.R.T., Y. Xu, R. Neto, J. Cloutier, R. Jaffe. 2009. Photochemical alteration of 3-oxygenated triterpenoids: Implications for the origin of 3,4-seco-triterpenoids in sediments. Chemosphere 74: 543-550.
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Smith, T.J., A.M. Foster, G. Tiling-Range, J.B. Jones Jr.. 2013. Dynamics of mangrove-marsh ecotones in subtropical coastal wetlands: fire, sea-level rise, and water levels. Fire Ecology 9(1): 66-77. DOI: 10.4996/fireecology.0901066
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Smith, T.J., G. Anderson, K. Balentine, G. Tiling, G.A. Ward, K. Whelan. 2009. Cumulative Impacts of Hurricanes on Florida Mangrove Ecosystems: Sediment Deposition, Storm Surges and Vegetation. Wetlands 29(1): 24-34. DOI: 10.1672/08-125.1
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Smoak, J.M., J.L. Breithaupt, T.J. Smith, C.J. Sanders. 2013. Sediment accretion and organic carbon burial relative to sea-level rise and storm events in two mangrove forests in Everglades National Park. Catena 104: 58-66. DOI: 10.1016/j.catena.2012.10.009

Sobrado, M.A., S.M.L. Ewe. 2006. Ecophysiological characteristics of Avicennia germinans and Laguncularia racemosa coexisting in a scrub mangrove forest at the Indian River Lagoon, Florida. Trees - Structure and Function 20(6): 679-687. DOI: 10.1007/s00468-006-0083-1

Sokol, E.R., J.M. Hoch, E.E. Gaiser, J.C. Trexler. 2014. Metacommunity structure along resource and disturbance gradients in Everglades wetlands. Wetlands 34(Suppl 1): 135-146. DOI: 10.1007/s13157-013-0413-1
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Spasojevic, M.J., R.J. Aicher, G. Koch, E.S. Marquardt, N. Mirotchnick, T. Troxler, S.L. Collins. 2010. Fire and grazing in a mesic tallgrass prairie: impacts on plant species and functional traits. Ecology 91(6): 1651-1659. DOI: 10.1890/09-0431.1
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Staehr, P.A., D. Bade, M.C. Van de Bogert, G. Koch, C. Williamson, P. Hanson, J.J. Cole, T. Kratz. 2010. Lake metabolism and the diel oxygen technique: State of the science. Limnology and Oceanography: Methods 8: 628-644. DOI: 10.4319/lom.2010.8.0628
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Stalker, J.C., D. Whitman, R.M. Price. (In Review). Case Study: Direct Current Resistivity Imaging of Saltwater Intrusion in the Karstic Biscayne Aquifer, Miami-Dade County, Florida, USA. Groundwater

Stalker, J.C., R.M. Price, P.K. Swart. 2009. Determining Spatial and Temporal Inputs of Freshwater, Including Submarine Groundwater Discharge, to a Subtropical Estuary Using Geochemical Tracers, Biscayne Bay, South Florida. Estuaries and Coasts 32(4): 694-708. DOI: 10.1007/s12237-009-9155-y
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Stalker, J.C., R.M. Price, V.H. Rivera-Monroy, J. Herrera-Silveira, S. Morales, J.A. Benitez, D. Alonzo-Parra. 2014. Hydrologic Dynamics of a Subtropical Estuary Using Geochemical Tracers, Celestun, Yucatan, Mexico. Estuaries and Coasts 37(6): 1376-1387. DOI: 10.1007/s12237-014-9778-5
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Statzell-Tallman, A., C. Belloch, J.W. Fell. 2008. Kwoniellamangroviensis gen.nov., sp.nov. (Tremellales , Basidiomycota ), a teleomorphic yeast from mangrove habitats in the Florida Everglades and Bahamas. FEMS Yeast Research 8(1): 103-113.
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Sternberg, L.S.L., M.C. Pinzon, W.T. Anderson, A.H. Jahren. 2006. Variation in oxygen isotope fractionation during cellulose synthesis: Molecular and biosynthetic effects. Plant, Cell and Environment 29(10): 1881-1889. DOI: 10.1111/j.1365-3040.2006.01564.x
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Sternberg, L.d.S.L., M.C. Pinzon, P.F. Vendramini, W.T. Anderson, A.H. Jahren, K. Beuning. 2007. Oxygen isotope ratios of cellulose-derived phenylglucosazone: An improved paleoclimate indicator of environmental water and relative humidity. Geochimica et Cosmochimica Acta 71(10): 2463-2473. DOI: 10.1016/j.gca.2007.03.004
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Stevenson, C., D.L. Childers. 2004. Hydroperiod and seasonal effects on fish decomposition in an oligotrophic Everglades marsh. Wetlands 24(3): 529-537.
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Stoffella, S., M.S. Ross, J.P. Sah, R.M. Price, P. Sullivan, E. Cline, L.J. Scinto. 2010. Survival and growth responses of eight Everglades tree species along an experimental hydrological gradient on two tree island types. Applied Vegetation Science 13(4): 439-449. DOI: 10.1111/j.1654-109X.2010.01081.x

Stringer, C.E., M. Rains. (In Review). Water sources in mangroves in three hydrogeomorphic settings on the Costalegre, Jalisco, Mexico. Wetland Ecology and Management

Suarez-Abelenda, M., T. O Ferreira, M. Camps-Arbestain, V.H. Rivera-Monroy, F. Macias, G.N. Nobrega, X.L. Otero. 2014. The effect of nutrient-rich effluents from shrimp farming on mangrove soil carbon storage and geochemistry under semi-arid climate conditions in northern Brazil . Geoderma 213: 551-559. DOI: 10.1016/j.geoderma.2013.08.007

Sullivan, P., E.E. Gaiser, D.D. Surratt, D.T. Rudnick, S.E. Davis, F.H. Sklar. 2014. Wetland Ecosystem Response to Hydrologic Restoration and Management: The Everglades and its Urban-Agricultural Boundary (FL, USA). Wetlands 34: 1-8. DOI: 10.1007/s13157-014-0525-2
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Sullivan, P., R.M. Price, F. Miralles-Wilhelm, M.S. Ross, L.J. Scinto, T.W. Dreschel, F.H. Sklar, E. Cline. 2014. The role of recharge and evapotranspiration as hydraulic drivers of ion concentrations in shallow groundwater on Everglades tree islands, Florida (USA). Hydrological Processes 28(2): 293-304. DOI: 10.1002/hyp.9575
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Sullivan, P., R.M. Price, J. Schedlbauer, A.K. Saha, E.E. Gaiser. 2014. The influence of hydrologic restoration on groundwater-surface water interactions in a karst wetland, the Everglades (FL, USA). Wetlands 34(Suppl 1): 23-35. DOI: 10.1007/s13157-013-0451-8
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Sullivan, P., R.M. Price, M.S. Ross, L.J. Scinto, S. Stoffella, E. Cline, T.W. Dreschel, F.H. Sklar. 2011. Hydrologic processes on tree islands in the Everglades (Florida, USA): tracking the effects of tree establishment and growth. Hydrogeology Journal 19(2): 367-378. DOI: 10.1007/s10040-010-0691-0
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Sullivan, P., V. Engel, M.S. Ross, R.M. Price. 2013. The influence of vegetation on the hydrodynamics and geomorphology of a tree island in Everglades National Park (Florida, United States). Ecohydrology DOI: 10.1002/eco.1394
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Swain, E., L. Stefanova, T.J. Smith. 2014. Applying Downscaled Global Climate Model Data to a Hydrodynamic Surface-Water and Groundwater Model. American Journal of Climate Change 3: 33-49. DOI: 10.4236/ajcc.2014.31004
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Swart, P.K., R.M. Price. 2002. Origin of Salinity Variations in Florida Bay. Limnology and Oceanography 47(4): 1234-1241.
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Swart, P.K., R.M. Price, L. Greer. 2001. The relationship between stable isotopic variations (O,H, and C) and salinity in waters and corals from environments in South Florida: Implications for reading the paleoenvironmental record. Bulletins of American Paleontology 361: 17-29.
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Thomas, S.E., E.E. Gaiser, F. Tobias. 2006. Effects of shading on calcareous benthic periphyton in a short-hydroperiod oligotrophic wetland (Everglades, FL, USA). Hydrobiologia 569(1): 209-221. DOI: 10.1007/s10750-006-0133-0
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Thomas, S.E., E.E. Gaiser, M. Gantar, L.J. Scinto. 2006. Quantifying the response of calcareous periphyton crusts to rehydration: a microcosm study (Florida Everglades). Aquatic Botany 84: 317-323. DOI: 10.1016/j.aquabot.2005.12.003

Timko, S.A., C. Romera-Castillo, R. Jaffe, W.J. Cooper. 2014. Photo-reactivity of natural dissolved organic matter from fresh to marine waters in the Florida Everglades, USA. Environmental Science Processes & Impacts 16: 866-878. DOI: 10.1039/c3em00591g
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Tobias, F., E.E. Gaiser. 2006. Taxonomy and distribution of taxa in the genus Gomphonema from the Florida Everglades, U.S.A. Diatom Research 21: 379-405.

Todd, M.J., R. Muneepeerakul, D. Pumo, S. Azaele, F. Miralles-Wilhelm, A. Rinaldo, I. Rodriguez-Iturbe. 2010. Hydrological drivers of wetland vegetation community distribution within Everglades National Park, Florida. Advances in Water Resources 33(10): 1279-1289. DOI: 10.1016/j.advwatres.2010.04.003
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Todd, M.J., R. Muneepeerakul, F. Miralles-Wilhelm, A. Rinaldo, I. Rodriguez-Iturbe. 2012. Possible climate change impacts on the hydrological and vegetative character of Everglades National Park, Florida. Ecohydrology 5(3): 326-336. DOI: 10.1002/eco.223
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Torres, L.G., M.R. Heithaus, B. Delius. 2006. Influence of teleost abundance on the distribution and abundance of sharks in Florida Bay, USA. Hydrobiologia 569(1): 449-455. DOI: 10.1007/s10750-006-0148-6

Trexler, J.C., C. Goss. 2009. Aquatic fauna as indicators for Everglades restoration: Applying dynamic targets in assessments. Ecological Indicators 9(6): S108-S119 . DOI: 10.1016/j.ecolind.2008.11.001
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Trexler, J.C., E.E. Gaiser, D.L. Childers. 2006. Interaction of hydrology and nutrients in controlling ecosystem function in oligotrophic coastal environments of South Florida. Hydrobiologia 569(1): 1-2. DOI: 10.1007/s10750-006-0118-z
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Trexler, J.C., W.F. Loftus, S. Perry. 2005. Disturbance frequency and community structure in a twenty-five year intervention study. Oecologia 145(1): 140-152. DOI: 10.1007/s00442-005-0094-4

Troxler, T.. 2007. Patterns of phosphorus, nitrogen and 15N along a peat development gradient in a coastal mire, Panama. Journal of Tropical Ecology 23(6): 683-691. DOI: 10.1017/S0266467407004464

Troxler, T., D.L. Childers. 2010. Biogeochemical Contributions of Tree Islands to Everglades Wetland Landscape Nitrogen Cycling During Seasonal Inundation. Ecosystems 13(1): 75-89. DOI: 10.1007/s10021-009-9302-0
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Troxler, T., D.L. Childers, C.J. Madden. 2014. Drivers of Decadal-Scale Change in Southern Everglades Wetland Macrophyte Communities of the Coastal Ecotone. Wetlands 34(Suppl 1): 81-90. DOI: 10.1007/s13157-013-0446-5
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Troxler, T., E.E. Gaiser, J.G. Barr, J.D. Fuentes, R. Jaffe, D.L. Childers, L. Collado-Vides, V.H. Rivera-Monroy, E. Castañeda-Moya, W.T. Anderson, R.M. Chambers, M. Chen, C. Coronado-Molina, S.E. Davis, V. Engel, C. Fitz, J.W. Fourqurean, T.A. Frankovich, J. Kominoski, C.J. Madden, S.L. Malone, S. Oberbauer, P.C. Olivas, J.H. Richards, C.J. Saunders, J. Schedlbauer, L.J. Scinto, F.H. Sklar, T.J. Smith, J.M. Smoak, G. Starr, R.R. Twilley, K.R.T. Whelan. 2013. Integrated carbon budget models for the Everglades terrestrial-coastal-oceanic gradient: current status and needs for inter-site comparisons. Oceanography 26: 98-107. DOI: 10.5670/oceanog.2013.51
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Troxler, T., M. Ikenaga, L.J. Scinto, J.N. Boyer, R. Condit, G. Gann, D.L. Childers. 2012. Patterns of soil bacteria and canopy community structure related to tropical peatland development. Wetlands 32: 769-782. DOI: 10.1007/s13157-012-0310-z

Troxler-Gann, T.. 2002. Response of Everglades tree islands to increased freshwater flow (Florida). Ecological Restoration 20(3): 211-212.

Troxler-Gann, T., D.L. Childers. 2006. Relationships between hydrology and soils describe vegetation patterns in seasonally flooded tree islands of the southern Everglades, Florida. Plant and Soil 279(1-2): 271-286. DOI: 10.1007/s11104-005-2362-9
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Troxler-Gann, T., D.L. Childers, D. Rondeau. 2005. Ecosystem structure, nutrient dynamics, and hydrologic relationships in tree islands of the southern Everglades, Florida, USA. Forest Ecology & Management 214(1-3): 11-27. DOI: 10.1016/j.foreco.2005.03.065
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Twilley, R.R., V.H. Rivera-Monroy. 2005. Developing performance measures of mangrove wetlands using simulation models of hydrology, nutrient biogeochemistry, and community dynamics. Journal of Coastal Research 40: 79-95.
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Varona-Cordero, F., F. Gutierrez-Mendieta, V.H. Rivera-Monroy. 2014. In Situ Response of Phytoplankton to Nutrient Additions in a Tropical Coastal Lagoon, (La Mancha, Veracruz, Mexico). Estuaries and Coasts 37(6): 1353-1375. DOI: 10.1007/s12237-014-9806-5

Vaudo, J.J., M.R. Heithaus. 2012. Diel and seasonal variation in the use of a nearshore sandflat by a ray community in a near pristine system. Marine and Freshwater Research 63: 1077-1084. DOI: 10.1071/MF11226

Vaudo, J.J., P. Matich, M.R. Heithaus. 2010. Mother-offspring isotope fractionation in two species of placentatrophic sharks. Journal of Fish Biology 77(7): 1724-1727. DOI: 10.1111/j.1095-8649.2010.02813.x

Volety, A.K., M. Savarese, S.G. Tolley, W.S. Arnold, P. Sime, P. Goodman, R.H. Chamberlain, P.H. Doering. 2009. Eastern oysters (Crassostrea virginica) as an indicator for restoration of Everglades Ecosystems. Ecological Indicators 9(6): S120-S136. DOI: 10.1016/j.ecolind.2008.06.005

Wachnicka, A., E.E. Gaiser. 2007. Morphological characterization of Amphora and Seminavis (Bacillariophyceae) from South Florida, U.S.A. Diatom Research 22: 387-455.
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Wachnicka, A., E.E. Gaiser. 2011. Ecology and distribution of diatoms in Biscayne Bay, Florida (USA): Implications for bioassessment and paleoenvironmental studies. Ecological Indicators 11(2): 622-632. DOI: 10.1016/j.ecolind.2010.08.008
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Wachnicka, A., E.E. Gaiser, L. Collins. 2013. Correspondence of historic salinity fluctuations in Florida Bay, USA, to atmospheric variability and anthropogenic changes . Journal of Paleolimnology 49(1): 103-115. DOI: 10.1007/s10933-011-9534-9
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Wachnicka, A., E.E. Gaiser, L. Collins, T.A. Frankovich, J. Boyer. 2010. Distribution of Diatoms and Development of Diatom-Based Models for Inferring Salinity and Nutrient Concentrations in Florida Bay and Adjacent Coastal Wetlands of South Florida (USA). Estuaries and Coasts 33(5): 1080-1098. DOI: 10.1007/s12237-010-9283-4
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Wachnicka, A., E.E. Gaiser, L. Wingard, H.O. Briceno, P. Harlem. 2013. Impact of late Holocene climate variability and anthropogenic activities on Biscayne Bay (Florida, U.S.A): evidence from diatoms. Palaeogeography, Palaeoclimatology, Palaeoecology 371: 80-92. DOI: 10.1016/j.palaeo.2012.12.020
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Wachnicka, A., L. Collins, E.E. Gaiser. 2013. Response of diatom assemblages to 130 years of environmental change in Florida Bay (USA) . Journal of Paleolimnology 49(1): 83-101. DOI: 10.1007/s10933-011-9556-3
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Walsh, V., R.M. Price. 2010. Determination of vertical and horizontal pathways of injected fresh wastewater into a deep saline aquifer (Florida, USA) using natural chemical tracers. Hydrogeology Journal 18(4): 1027-1042. DOI: 10.1007/s10040-009-0570-8
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Ward, G.A., T.J. Smith, K.R.T. Whelan, T.W. Doyle. 2006. Regional processes in mangrove ecosystems: spatial scaling relationships, biomass, and turnover rates following catastrophic disturbance. Hydrobiologia 569(1): 517-527. DOI: 10.1007/s10750-006-0153-9
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Watanabe, A., K. Moroi, H. Sato, K. Tsutsuki, N. Maie, L. Melling, R. Jaffe. 2012. Contributions of humic substances to the dissolved organic carbon pool in wetlands from different climates. Chemosphere 88(10): 1265-1268. DOI: 10.1016/j.chemosphere.2012.04.005
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Watanabe, A., K. Tsutsuki, Y. Inoue, N. Maie, L. Melling, R. Jaffe. 2014. Composition of dissolved organic nitrogen in rivers associated with wetlands. Science of the Total Environment 493: 220-228. DOI: 10.1016/j.scitotenv.2014.05.095

Waters, M.N., J.M. Smoak, C.J. Saunders. 2013. Historic primary producer communities linked to water quality and hydrologic changes in the northern Everglades. Journal of Paleolimnology 49(1): 67-81. DOI: 10.1007/s10933-011-9569-y

Wdowinski, S., S.-H. Hong, A. Mulcan, B. Brisco. 2013. Remote-Sensing Monitoring of Tide Propagation Through Coastal Wetlands. Oceanography 26: 64-69. DOI: 10.5670/oceanog.2013.46
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Wetzel, P., A.G. van der Valk, S. Newman, D.E. Gawlik, T. Troxler-Gann, C. Coronado-Molina, D.L. Childers, F.H. Sklar. 2005. Maintaining tree islands in the Florida Everglades: nutrient redistribution is the key. Frontiers in Ecology 3(7): 370-376.
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Wetzel, P., F.H. Sklar, C. Coronado-Molina, T. Troxler, S.L. Krupa, P. Sullivan, S.M.L. Ewe, R.M. Price, S. Newman, W.H. Orem. 2011. Biogeochemical Processes on Tree Islands in the Greater Everglades: Initiating a New Paradigm. Critical Reviews in Environmental Science and Technology 41(S1): 670-701. DOI: 10.1080/10643389.2010.530908
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Whitmer, A.C., L.A. Ogden, J. Lawton, P. Sturner, P.M. Groffman, L. Schneider, D. Hart, B.S. Halpern, W. Schlesinger, S. Raciti, N. Bettez, S. Ortega, L. Rustad, S.T.A. Pickett, M. Killelea. 2010. The engaged university: providing a platform for research that transforms society. Frontiers in Ecology and the Environment 8(6): 314-321. DOI: 10.1890/090241

Williams, A.J., J.C. Trexler. 2006. A preliminary analysis of the correlation of food-web characteristics with hydrology and nutrient gradients in the southern Everglades. Hydrobiologia 569(1): 493-504. DOI: 10.1007/s10750-006-0151-y
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Williams, C.J., F.J. Jochem. 2006. Ectoenzyme kinetics in Florida Bay: Implications for bacterial carbon source and nutrient status. Hydrobiologia 569(1): 113-127. DOI: 10.1007/s10750-006-0126-z
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Williams, C.J., J.N. Boyer, F.J. Jochem. (In Review). Sequential hurricane disturbances to the pelagic Florida Bay microbial system: Consequences for aminopeptidase activity and microbial nitrogen cycling. Marine Ecology Progress Series

Williams, C.J., J.N. Boyer, F.J. Jochem. 2008. Indirect hurricane effects on resource availability and microbial communities in a subtropical wetland - estuary transition zone. Estuaries and Coasts 31(1): 204-214.
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Williams, C.J., J.N. Boyer, F.J. Jochem. 2009. Microbial activity and carbon, nitrogen, and phosphorus content in a subtropical seagrass estuary (Florida Bay): evidence for limited bacterial use of seagrass production. Marine Biology 156(3): 341-353. DOI: 10.1007/s00227-008-1087-8
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Williams, C.J., R. Jaffe, W.T. Anderson, F.J. Jochem. 2009. Importance of seagrass as a carbon source for heterotrophic bacteria in a subtropical estuary (Florida Bay). Estuaries, Coastal and Shelf Science 85: 507-514. DOI: 10.1016/j.ecss.2009.09.019
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Wirsing, A.J., M.R. Heithaus. 2012. Behavioural transition probabilities in dugongs change with habitat and predator presence: implications for sirenian conservation. Marine and Freshwater Research 63: 1069-1076. DOI: 10.1071/MF12074
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Wirsing, A.J., M.R. Heithaus, A. Frid. 2014. Cross-fertilizing aquatic and terrestrial research to understand predator risk effects. WIREs Water 1(5): 439-448. DOI: 10.1002/wat2.1039
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Wozniak, J., D.L. Childers, W.T. Anderson, D.T. Rudnick, C.J. Madden. 2008. An In Situ Mesocosm Method for Quantifying Nitrogen Cycling Rates in Oligotrophic Wetlands Using 15N Tracer Techniques. Wetlands 28(2): 502-512.
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Wozniak, J., W.T. Anderson, D.L. Childers, E.E. Gaiser, C.J. Madden, D.T. Rudnick. 2012. Potential N processing by southern Everglades freshwater marshes: Are Everglades marshes passive conduits for nitrogen? Estuarine, Coastal and Shelf Science 96: 60-68. DOI: 10.1016/j.ecss.2011.08.024
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Xu, Y., C.W. Holmes, R. Jaffe. 2007. Paleoenvironmental assessment of recent environmental changes in Florida Bay, USA: A biomarker based study. Estuarine, Coastal and Shelf Science 73(1-2): 201-210. DOI: 10.1016/j.ecss.2007.01.002

Xu, Y., R. Jaffe. 2007. Lipid biomarkers in suspended particulates from a subtropical estuary: Assessment of seasonal changes in sources and transport of organic matter. Marine Environmental Research 64: 666-678. DOI: 10.1016/j.marenvres.2007.07.004
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Xu, Y., R. Jaffe. 2010. Occurrence, distribution and origin of C30 cyclobotryococcenes in a subtropical wetland/estuarine ecosystem. Chemosphere 81(7): 918-924. DOI: 10.1016/j.chemosphere.2010.07.060
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Xu, Y., R. Jaffe, A. Wachnicka, E.E. Gaiser. 2006. Occurrence of C25 highly branched isoprenoids in Florida Bay: Paleoenvironmental indicators of diatom-derived organic matter inputs. Organic Geochemistry 37(7): 847-859. DOI: 10.1016/j.orggeochem.2006.02.001
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Xu, Y., R.N. Mead, R. Jaffe. 2006. A molecular marker based assessment of sedimentary organic matter sources and distributions in Florida Bay. Hydrobiologia 569(1): 179-192. DOI: 10.1007/s10750-006-0131-2
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Yamashita, Y., B.D. Kloeppel, J. Knoepp, G.L. Zausen, R. Jaffe. 2011. Effects of Watershed History on Dissolved Organic Matter Characteristics in Headwater Streams. Ecosystems Online First, DOI: 10.1007/s10021-011-9469-z DOI: 10.1007/s10021-011-9469-z

Yamashita, Y., J.N. Boyer, R. Jaffe. 2013. Evaluating the distribution of terrestrial dissolved organic matter in a complex coastal ecosystem using fluorescence spectroscopy. Continental Shelf Research DOI: 10.1016/j.csr.2013.06.010: 136?144.
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Yamashita, Y., L.J. Scinto, N. Maie, R. Jaffe. 2010. Dissolved Organic Matter Characteristics Across a Subtropical Wetland's Landscape: Application of Optical Properties in the Assessment of Environmental Dynamics. Ecosystems 13: 1006-1019. DOI: 10.1007/s10021-010-9370-1
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Yamashita, Y., R. Jaffe. 2008. Characterizing the Interactions between Trace Metals and Dissolved Organic Matter Using Excitation-Emission Matrix and Parallel Factor Analysis. Environmental Science & Technology 42(19): 7374-7379. DOI: 10.1021/es801357h
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Yurek, S., D.L. DeAngelis, J.C. Trexler, F. Jopp, D.D. Donalson. 2013. Simulating mechanisms for dispersal, production and stranding of small forage fish in temporary wetland habitats. Ecological Modelling 250: 391-401. DOI: 10.1016/j.ecolmodel.2012.11.001
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Zapata-Rios, X., R. Rivero, G.M. Naja, P. Goovaerts. 2012. Spatial and temporal phosphorus distribution changes in a large wetland ecosystem. Water Resources Research 48: W09512. DOI: 10.1029/2011WR011421
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Zapata-Rios, X., R.M. Price. 2012. Estimates of groundwater discharge to a coastal wetland using multiple techniques: Taylor Slough, Everglades National Park, USA . Hydrogeology Journal 20 : 1651-1668. DOI: 10.1007/s10040-012-0907-6
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Zhang, K., H. Liu, Y. Li, H. Xu, J. Shen, J.R. Rhome, T.J. Smith. 2012. The Role of Mangroves in Attenuating Storm Surges. Estuarine, Coastal and Shelf Science 102-103: 11-23. DOI: 10.1016/j.ecss.2012.02.021
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Zhang, K., M. Simard, M.S. Ross, V.H. Rivera-Monroy, P. Houle, P.L. Ruiz, R.R. Twilley, K. Whelan. 2008. Airborne Laser Scanning Quantification of Disturbances from Hurricanes and Lightning Strikes to Mangrove Forests in Everglades National Park, USA. Sensors 8(4): 2262-2292.
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Zieman, J.C., J.W. Fourqurean, T.A. Frankovich. 2004. Reply to B. E. Lapointe and P. J. Bariles comment on our paper Seagrass die-off in Florida Bay: long term trends in abundance and growth of turtlegrass, Thalassia testudinum. Estuaries 27(1): 165-172.
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Master's Theses       back to the top
Barr, Dane . 2006. Incorporating tidal energy advection into the energy balance for a mangrove forest in the Florida Everglades. Master's thesis, University of Virginia.

Bernard, Rebecca . 2010. Effects of light and nutrient supply on stable isotopic composition and fractionation in N-limited seagrass beds. Master's thesis, Florida International University.

Boucek, Ross . 2011. Resource Partitioning among Three Mesoconsumers at a Marsh Mangrove Ecotone: A Response to a Seasonal Resource Pulse Subsidy. Master's thesis, Florida International University.

Breithaupt, Joshua L.. 2012. Organic Carbon Burial Rates in Mangrove Soils: Global Context and a Preliminary Investigation of the Coastal Everglades. Master's thesis, University of South Florida St. Petersburg.

Byron, Dorothy A.. 2006. Determining the physiological response of a subtropical seagrass, Thalassia Testudinum, to salinity stress using pulse amplitude modulated (PAM) fluorometry. Master's thesis, Florida International University.

Cormier, Nicole . 2003. Belowground productivity in mangrove forests of Pohnpei and Kosrae, Federated States of Micronesia. Master's thesis, University of Louisiana at Lafayette.

Cornett, Virginia C.. 2006. Spatial distribution of submerged aquatic vegetation in the Shark River Estuary and implications for understanding movement and feeding patterns of manatees (Tichechus manatus latirostris). Master's thesis, Florida International University.

Cunniff, Kevin M.. 2006. Phenology, sexual reproduction, and the factors affecting sexual reproduction of the marine angiosperm, Thalassia testudinum, in the Florida Keys National Marine Sanctuary (FKNMS). Master's thesis, Florida International University.

Delius, Bryan K.. 2007. Distribution and trophic position of juvenile bull sharks in an oligotrophic estuary. Master's thesis, Florida International University.

Dewsbury, Bryan M.. 2006. Artificially induced aggregation of fish and their effects on nutrient regimes and primary producers in an oligotrophic subtropical estuary. Master's thesis, Florida International University.

Dunlop, Katherine . 2009. Examination of cue utilization & anti-predator responses by native Everglades taxa to a non-native predator, the African jewelfish. Master's thesis, Nova Southeastern University Oceanographic Center.

Edwards, Christopher . 2013. Recreational Angler Perspectives of Nonnative Fish Species and Mercury Advisories. Master's thesis, Florida International University.

Ferdie, Meredith . 2002. Nutrient Limitation of Benthic Primary Production in the Upper Florida Keys. Master's thesis, Florida International University.

Gandy, David A.. 2013. Examining Gradients in Novelty: Native and Non-native Fish Assemblages in Everglades Canals. Master's thesis, Florida International University.

Gann, Tiffany Troxler. 2001. Investigating tree island community response to increased freshwater flow in the Southern Everglades. Master's thesis, Florida International University.

Gibson, Patrick J.. 2005. Volume transport and nutrient loading between Florida Bay and the Florida Keys National Marine Sanctuary though Long Key Channel. Master's thesis, Florida International University.

Goss, Charles . 2006. Fish colonization of temporary wetlands in the context of the Everglades landscape. Master's thesis, Florida International University.

Green, David P.J.. 2007. Community structure and physiological stresses of oligohaline zone fishes in south Florida. Master's thesis, Florida International University.

Hanan, Erin J.. 2008. Multi-Scaled Patterning of Plant-Soil-Water Interactions across Tree Islands and Marshes within the Prairie and Slough Landscapes of Everglades National Park. Master's thesis, Florida International University.

Hijuelos, Ann C.. 2012. Spatial and temporal patterns in the distribution, behavior, and activity of fishes in the canals of the Everglades. Master's thesis, Florida International University.

Isherwood, Ewan . 2013. The Effect of Contemporary Hydrologic Modification on Vegetation Community Composition Distinctness in the Florida Everglades. Master's thesis, Florida International University.

Iwaniec, David M.. 2008. Regulation and Organization of Periphyton from the Florida Everglades, U.S.A.. Master's thesis, Florida International University.

Jimenez, Kristine L.. 2010. A Comparison of CO2 Exchange Rates for Long- and Short-Hydroperiod Everglades Marshes. Master's thesis, University of Alabama.

Juszli, Gregory M.. 2006. Patterns in belowground primary productivity and belowground biomass in marshes of the Everglades' oligohaline ecotone. Master's thesis, Florida International University.

Kotkowski, Rachel . 2014. Environmental Influences on Bacterio-phytoplanktonic Coupling and Bacterial Growth Efficiency in a Sub-tropical Estuary. Master's thesis, Florida International University.

Lopez, Diana P.. 2011. Trait Variation in an Everglades Invasive Species: Life histories, Boldness, and Dispersal in the African Jewelfish. Master's thesis, Florida International University.

McCarthy, Lauren . 2009. Segregation of palaemonid shrimp species along a salinity gradient in Shark River, Everglades National Park. Master's thesis, Nova Southeastern University Oceanographic Center.

Mir-Gonzalez, Danielle . 2007. Groundwater nutrient availability controls on nearshore benthic community structure in Biscayne Bay, Florida. Master's thesis, Florida International University.

Munyon, Jay . 2010. The Effects of Hydrology and Phosphorus on Everglades Productivity. Master's thesis, Florida International University.

Pokharel, Shiva . 2014. Analysis of land use change as a method of predicting water demands in an urbanizing Environment: Redland, Mimi-Dade County, Florida. Master's thesis, Florida International University.

Poret, Nicole . 2005. Belowground Decomposition of Mangrove Roots in the Florida Coastal Everglades. Master's thesis, University of Louisiana at Lafayette.

Reed, David . 2007. Effects of hydrology and light on seedling establishment and growth of four wetland tree species in tree islands of northern Shark Slough, Everglades National Park. Master's thesis, Florida International University.

Rogers, Matthew . 2005. Bacterivory, growth rates, and bacterial abundance in Florida Bay. Master's thesis, Florida International University.

Romigh, Melissa . 2005. Organic Carbon Flux at the Mangrove Soil-Water Column Interface in the Florida Coastal Everglades. Master's thesis, Texas A&M University.

Rubio, Gustavo . 2004. Macrophyte Decomposition and Litter Fall Dynamics in the Everglades Ecotones. Master's thesis, Florida International University.

Ruiz Halpern, Sergio . 2006. Response of the seagrass Thalassia testudinum to experimental manipulations of sedimentary iron and organic matter in a subtropical carbonate environment. Master's thesis, Florida International University.

Sanchez, Michelle. 2009. Distribution of Particle Organic Material in Biscayne Bay. Master's thesis, Florida International University.

Sandoval, Estefania . 2013. Ten Year Study on Water Flushing Times and Water Quality in Southern Taylor Slough, Everglades National Park, FL. Master's thesis, Florida International University.

Sarabia, Robin Elizabeth. 2012. Spatiotemporal variation in abundance and social structure of bottlenose dolphins in the Florida Coastal Everglades. Master's thesis, Florida International University.

Spence, V.A.. 2011. Estimating groundwater discharge in the oligohaline ecotone of the Everglades using temperature as a tracer and variable-density groundwater models. Master's thesis, University of South Florida.

Stanaway, Kathryn . 2005. The effects of microbial mats on sediment nutrient fluxes in Florida Bay, USA. Master's thesis, Florida International University.

Stevenson, Christine Elizabeth. 2001. Fish decomposition and the role of fish detritus in nutrient cycling within an oligotrophic Everglades freshwater marsh. Master's thesis, Florida International University.

Stuhar, Martha Elizabeth. 2004. Relationship between soil moisture and nutrient availability in tree islands of Shark Slough, Everglades National Park. Master's thesis, Florida International University.

Tsai, Cheng-Feng . 2008. Application of the HYMAN Model to evaluate the water and salt budgets in three mangrove sites along Shark River, Everglades. Master's thesis, Louisiana State University.

Vlaar, Theo . 2005. Hydrologic conditions of the Shark Estuary in relation to regional physical forcings in the Everglades. Master's thesis, Larenstein University.

Williams, Alissa Jade. 2004. Hydrology and primary production influence food-web patterns in the Florida Everglades. Master's thesis, Florida International University.

Wood, Adam . 2005. Dynamics of detrital particulate organic material in the ridge and slough landscape of the Everglades. Master's thesis, Florida International University.

Yang, Chengyong . 2002. Molecular characterization of dissolved organic matter in the Florida coastal Everglades. Master's thesis, Florida International University.

Zapata-Rios, Xavier . 2009. Groundwater/surface water interactions in Taylor Slough-Everglades National Park. Master's thesis, Florida International University.

Ph.D. Dissertations       back to the top
Barr, Jordan G.. 2005. Carbon assimilation by riverine mangroves in the Florida Everglades. Ph.D. dissertation, University of Virginia.

Campbell, Justin . 2012. The Effects of Carbon Dioxide Fertilization on the Ecology of Tropical Seagrass Communities. Ph.D. dissertation, Florida International University.

Cardona-Olarte, Pablo . 2004. Responses of neotropical mangrove seedlings to environmental regulators. Ph.D. dissertation, University of Louisiana at Lafayette.

Castañeda, Edward . 2010. Landscape Patterns of Community Structure, Biomass and Net Primary Productivity of Mangrove Forests in the Florida Coastal Everglades as a Function of Resources, Regulators, Hydroperiod, and Hurricane Disturbance. Ph.D. dissertation, Louisiana State University.

Chen, Meilian. 2011. Characterization, Sources, and Transformations of Dissolved Organic Matter (DOM) in the Florida Coastal Everglades (FCE). Ph.D. dissertation, Florida International University.

Dewsbury, Bryan M.. 2014. The Ecology and Economics of Seagrass Community Structure. Ph.D. dissertation, Florida International University.

Ding, Yan . 2013. Environmental Dynamics of Dissolved Black Carbon in Aquatic Ecosystems. Ph.D. dissertation, Florida International University.

Evans, Samantha . 2008. Carbon and Nitrogen Stable Isotope Patterns in South Florida Coastal Ecosystems: Modern and Paleoceanographic Perspectives. Ph.D. dissertation, Florida International University.

Frankovich, Thomas A.. 2006. Epiphyte light transmission relationships and biological and physicochemical influences on seagrass epiphyte standing stock and community composition. Ph.D. dissertation, University of Virginia.

Gao, Min . 2007. Chemical characterization of soil organic matter in an oligotrophic, subtropical, freshwater wetland system: Sources, diagenesis and preservation. Ph.D. dissertation, Florida International University.

Garvoille, Rebecca . 2013. Sociocultural Complexities of Ecosystem Restoration: Remaking Identity, Landscape and Belonging in the Florida Everglades. Ph.D. dissertation, Florida International University.

Gottlieb, Andrew David. 2003. Short and long hydroperiod Everglades periphyton mats: community characterization and experimental hydroperiod manipulation. Ph.D. dissertation, Florida International University.

Halun, Sitti Zayda B.. 2011. The Effects of Fertilization and Simulated Grazing on the Community Structure of a Seagrass Bed in South Florida. Ph.D. dissertation, Florida International University.

Harrison, Elizabeth . 2014. Analyzing invasion success of the Mayan Cichlid (Cichlasoma urophthalmus) in southern Florida. Ph.D. dissertation, Florida International University.

Josette Marie La Hee. 2010. The Influence of Phosphorus on Periphyton Mats from the Everglades and Three Tropical Karstic Wetlands. Ph.D. dissertation, Florida International University.

Koch, Gregory . 2012. Dynamics of Ecosystem Metabolism and Flocculent Detritus Transport in Estuarine Taylor River. Ph.D. dissertation, Florida International University.

Krauss, Kenneth W.. 2004. Growth, photosynthetic, and water use characteristics of south Florida mangrove vegetation in response to varying hydroperiod. Ph.D. dissertation, University of Louisiana at Lafayette.

Lagomasino, David . 2014. Ecohydrology, evapotranspiration and hydrogeochemistry of carbonate mangrove wetlands. Ph.D. dissertation, Florida International University.

Lee, Sylvia . 2014. Mechanisms of Diatom Assembly in a Hydrologically-Managed Subtropical Wetland. Ph.D. dissertation, Florida International University.

Malone, Sparkle . 2014. Hydrology drives Everglades ecosystem function: implications for ecosystem vulnerability to drought, energy balance, climate teleconnections and climate change. Ph.D. dissertation, University of Alabama.

Mancera-Pineda, Jose Ernesto. 2003. The Contribution of Mangrove Outwelling to Coastal Food Webs as a Function of Environmental Settings. Ph.D. dissertation, University of Louisiana at Lafayette.

Matich, Philip . 2014. Environmental and individual factors shaping the habitat use and trophic interactions of juvenile bull sharks (Carcharhinus leucas) in a subtropical estuary. Ph.D. dissertation, Florida International University.

Mead, Ralph N.. 2003. Organic matter dynamics in the Florida coastal Everglades : A molecular marker and isotopic approach. Ph.D. dissertation, Florida International University.

Pisani, Oliva. 2011. Local Biomass Control on the Composition and Reactivity of Particulate Organic Matter in Aquatic Environments. Ph.D. dissertation, Florida International University.

Quillen, Amanda Kay. 2009. Diatom-Based Paleolimnological Reconstruction of Quaternary Environments in a Florida Sinkhole Lake. Ph.D. dissertation, Florida International University.

Rosenblatt, Adam . 2013. Factors Influencing Movements and Foraging Ecology of American Alligators (Alligator mississippiensis) in a Dynamic Subtropical Coastal Ecosystem. Ph.D. dissertation, Florida International University.

Ruehl, Clifton B.. 2010. The Interactive Effects of Predators, Resources, and Disturbance on Freshwater Snail Populations from the Everglades. Ph.D. dissertation, Florida International University.

Smith, Shawn Elizabeth. 2004. Defining the role of floating periphyton mats in shaping food-web dynamics in the Florida Everglades. Ph.D. dissertation, Florida International University.

Stalker, Jeremy. 2008. Hydrological Dynamics Between a Coastal Aquifer and the Adjacent Estuarine System, Biscayne Bay, South Florida. Ph.D. dissertation, Florida International University.

Stringer, Christina Elaine. 2010. Hydrologic Controls on Salinity in Mangroves and Lagoons. Ph.D. dissertation, University of South Florida.

Sullivan, Pamela . 2011. Groundwater-Surface Water Interactions on Tree Islands in the Everglades, South Florida. Ph.D. dissertation, Florida International University.

Troxler-Gann, Tiffany . 2005. Investigating biogeochemical connectivity in a complex wetland landscape: N sources and mechanisms of N sequestration in forested islands of the southern Everglades. Ph.D. dissertation, Florida International University.

Wachnicka, Ania . 2009. Quantitative Diatom-Based Reconstruction of Paleoenvironmental Conditions in Florida Bay and Biscayne Bay, U.S.A.. Ph.D. dissertation, Florida International University.

Whelan, Kevin . 2005. The successional dynamics of lightning-initiated canopy gaps in the mangrove forests of Shark River, Everglades National Park, USA. Ph.D. dissertation, Florida International University.

Williams, Clayton . 2008. Relative significance of pelagic, benthic, and allochthonous organic matter to microbial carbon cycling in a phosphorus-depleted subtropical estuary (Florida Bay). Ph.D. dissertation, Florida International University.

Wozniak, Jeffrey R.. 2006. Quantifying nitrogen cycling rates in freshwater marshes of the southern Everglades using 15N tracer techniques. Ph.D. dissertation, Florida International University.

Xu, Yunping . 2005. Origin, transport and fate of organic matter in Florida Bay: A biomarker record of historical environmental changes. Ph.D. dissertation, Florida International University.

Reports       back to the top
Boyer, J.N., B. Keller. 2007. Nutrient Dynamics . Pages 55-76 In Hunt, J.H., W.K. Nuttle (eds.) Florida Bay Science Program: Synthesis of Research Activities in Florida Bay. Florida Marine Research Institute Technical Report TR-11.
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Boyer, J.N., P.J. Gibson. 2005. Nutrient Mass Flux between Florida Bay and the Florida Keys National Marine Sanctuary. National Oceanic Atmospheric Administration Technical Report # NA16OP2551
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Boyer, J.N., R. Jaffe, S.K. Dailey, N. Maie. 2004. Biological Availability of Organic Nitrogen in Florida Bay. Final Report to the South Florida Water Management District (Contract No. C-C20306A)
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Boyer, J.N., S.K. Dailey, P.J. Gibson, M.T. Rogers, D. Mir-Gonzalez. 2004. The Importance of Organic Phosphorus in Promoting Cyanobacterial Blooms in Florida Bay. National Oceanic Astmospheric Administration Technical Report # NA06OP0517
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Deng, Y., H. Solo-Gabriele, M. Laas, A. Omae, G. He. 2007. Documenting the Importance of Water Flow to Everglades Landscape Structure and Sediment Transport in Everglades National Park, Phase II. Everglades National Park, Homestead, FL
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Gaiser, E.E., R.M. Price, L.J. Scinto, J.C. Trexler. 2010. Comprehensive Final Report to Everglades National Park, CA H5297-02-0106, Phosphorus retention and sub-surface movement through the S-332 detention basins on the eastern boundary of Everglades National Park & CA H5000-06-5040, TA J5297-08-0001, Modeling of Phosphorus Retention and Sub-Surface Movement through the S-332 Detention Basins on the Eastern Boundary of Everglades National Park (Phase-II). June 30, 2010, 370pp.
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Garvoille, R.. 2011. Understanding Interdisciplinarity in the Long Term Ecological Research Network. Anthropology News , 52: 25-26.
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He, G., H. Solo-Gabriele, M. Laas. 2008. Documenting the Importance of Water Flow to Everglades Landscape Structure and Sediment Transport in Everglades National Park, Phase III. Everglades National Park, Homestead, FL

Leonard, L., A.L. Croft, G. He, H. Solo-Gabriele, M. Laas, D.L. Childers, D. Rondeau, G.D. Losada, R. Travieso, V. Engel. 2008. Recover MAP Module Activity Title: Greater Everglades Module: Field Methods Development & Implementation for Ridge and Slough Flow Patterns. South Florida Water Management District, West Palm Beach, FL

Price, R.M., J.L. Jolicoeur, T.J. Smith, V. Engel. 2008. Determining Nutrient Concentrations in Groundwater Along the Mangrove Ecotone Region of Shark River Slough. South Florida Water Management District, West Palm Beach, FL

Rivera-Monroy, V.H., E. Castañeda-Moya, R.R. Twilley. 2011. Mangrove forest functioning in response to hurricane disturbance. Final Report. Sub award 4126-LSU-TU-L600. Funded by the National Institute for Climatic Change Research (NICCR) Coastal Center at Tulane University. Office of Biological and Environmental Research (BER) of the U.S. Department of Energy (DOE)
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Rivera-Monroy, V.H., R.R. Twilley, E. Castañeda. 2005. Large-scale assessment of landscape changes and recovery in forest structure of mangrove wetlands subject to human (shrimp mariculture, silviculture, agricultural chemicals), freshwater diversion, and natural disturbances (hurricanes, other severe storms, climate and sea level change) using enhanced Shuttle Radar Topography Mission data. Interim Report. Project NASA/IDS/03-0151-0113. Contract No. 593265
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Saunders, C.J., D.L. Childers, W.T. Anderson, J. Lynch, R. Jaffe. 2007. Understanding Cladium jamaicense dynamics over the last century in ENP using simulation modeling and paleoecological data - 24 month Report. Everglades National Park, National Park Service (#EVER-00278)
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Saunders, C.J., R. Jaffe, M. Gao, W.T. Anderson, J. Lynch, D.L. Childers. 2008. Decadal to millennial dynamics of ridge-and-slough wetlands in Shark Slough, Everglades National Park: integrating paleoecological data and simulation modeling. Final Report submitted to the National Park Service/Everglades National Park

Scinto, L.J., R.M. Price, M.S. Ross. 2009. Loxahatchee Impoundment Landscape Assessment (LILA):Tree Island Experiments and Management May 1, 2005 to September 4, 2009. Final Report Contract RS-050962-A02 July 21, 2009, Submitted to SFMWD
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Smith, T.J., G. Anderson, G. Tiling. 2007. A Tale of Two Storms: Surges and Sediment Deposition from Hurricanes Andrew and Wilma in Florida Southwest Coast Mangrove Forests. Pages 169-174 In Farris, G.S., G.J. Smith, M.P. Crane, C.R. Demas, L.L. Robbins and D.L. Lavoie (Eds.). Science and the Storms: the USGS Response to the Hurricanes of 2005. USGS Circular 1306. U.S. Geological Survey, Reston, VA

Stalker, J.C., A. McFarlane, R.M. Price. 2009. Geochemical Investigation of the surface water and groundwater in the immediate Vicinity of Florida Power and Light Turkey Point Cooling Canals. Revised Final Report: July 30th, 2009, Submitted to SFWMD

Sullivan, P., R.M. Price. 2009. Identifying the connection between groundwater nutrients and stable isotopes in the ridge-slough-tree island community at Loxahatchee Impoundment Landscape Assessment (LILA). Final Report for PO# 4500031463, November 29, 2009, Submitted to SFWMD
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Sullivan, P., R.M. Price. 2009. A physical investigation of groundwater-surface water interaction at Loxahatchee Impound Landscape Assessment (LILA). Final Report for PO# 4500013487, July 30, 2009, Submitted to SFMWD
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Troxler, T.. 2010. Monitoring for Potential Water Quality Impacts along the Eastern Boundary of Everglades National Park, Including Taylor Slough. Final Report submitted to Everglades National Park, National Park Service
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Ward, G.A., T.J. Smith. 2007. Predicting Mangrove Forest Recovery on the Southwest Coast of Florida Following the Impact of Hurricane Wilma, October 2005. Pages 175-182 In Farris, G.S., G.J. Smith, M.P. Crane, C.R. Demas, L.L. Robbins and D.L. Lavoie (Eds.). Science and the Storms: the USGS Response to the Hurricanes of 2005. USGS Circular 1306. U.S. Geological Survey, Reston, VA.
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Number of books = 5
Number of book chapters = 30
Number of journal articles = 440
Number of Ph.D. dissertations = 37
Number of Master's theses = 49
Number of reports = 21
Total = 583
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